Literature DB >> 11691943

Bisulfite genomic sequencing of microdissected cells.

A Kerjean1, A Vieillefond, N Thiounn, M Sibony, M Jeanpierre, P Jouannet.   

Abstract

Mapping of methylation patterns in CpG islands has become an important tool for understanding tissue-specific gene expression in both normal and pathological situations. However, the inherent cellular heterogeneity of any given tissues can affect the outcome and interpretation of molecular studies. In order to analyse genomic DNA methylation on a pure cell population from tissue sample, we have developed a simple technique of single-cell microdissection from cryostat sections which can be combined with bisulfite-mediated sequencing of 5-methylcytosine. We report here our results on the methylation status of the androgen receptor gene studied by bisulfite genomic sequencing on purified cells isolated from human testis.

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Year:  2001        PMID: 11691943      PMCID: PMC60205          DOI: 10.1093/nar/29.21.e106

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  14 in total

Review 1.  DNA methylation in health and disease.

Authors:  K D Robertson; A P Wolffe
Journal:  Nat Rev Genet       Date:  2000-10       Impact factor: 53.242

Review 2.  Laser-assisted microdissection: applications in molecular pathology.

Authors:  Y Sirivatanauksorn; R Drury; T Crnogorac-Jurcević; V Sirivatanauksorn; N R Lemoine
Journal:  J Pathol       Date:  1999-10       Impact factor: 7.996

Review 3.  Laser capture microscopy.

Authors:  S Curran; J A McKay; H L McLeod; G I Murray
Journal:  Mol Pathol       Date:  2000-04

4.  Methylation patterns in human androgen receptor gene and clonality analysis.

Authors:  S J Jang; L Mao
Journal:  Cancer Res       Date:  2000-02-15       Impact factor: 12.701

Review 5.  Laser micromanipulation systems as universal tools in cellular and molecular biology and in medicine.

Authors:  K Schütze; H Pösl; G Lahr
Journal:  Cell Mol Biol (Noisy-le-grand)       Date:  1998-07       Impact factor: 1.770

6.  A modified and improved method for bisulphite based cytosine methylation analysis.

Authors:  A Olek; J Oswald; J Walter
Journal:  Nucleic Acids Res       Date:  1996-12-15       Impact factor: 16.971

7.  Establishment of the paternal methylation imprint of the human H19 and MEST/PEG1 genes during spermatogenesis.

Authors:  A Kerjean; J M Dupont; C Vasseur; D Le Tessier; L Cuisset; A Pàldi; P Jouannet; M Jeanpierre
Journal:  Hum Mol Genet       Date:  2000-09-01       Impact factor: 6.150

8.  Methylation of the androgen receptor minimal promoter silences transcription in human prostate cancer.

Authors:  H Kinoshita; Y Shi; C Sandefur; L F Meisner; C Chang; A Choon; C R Reznikoff; G S Bova; A Friedl; D F Jarrard
Journal:  Cancer Res       Date:  2000-07-01       Impact factor: 12.701

9.  Involvement of the X chromosome in non-Hodgkin lymphoma.

Authors:  H L McDonald; R D Gascoyne; D Horsman; C J Brown
Journal:  Genes Chromosomes Cancer       Date:  2000-07       Impact factor: 5.006

10.  Methylation of HpaII and HhaI sites near the polymorphic CAG repeat in the human androgen-receptor gene correlates with X chromosome inactivation.

Authors:  R C Allen; H Y Zoghbi; A B Moseley; H M Rosenblatt; J W Belmont
Journal:  Am J Hum Genet       Date:  1992-12       Impact factor: 11.025

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  11 in total

1.  Comparative isoschizomer profiling of cytosine methylation: the HELP assay.

Authors:  Batbayar Khulan; Reid F Thompson; Kenny Ye; Melissa J Fazzari; Masako Suzuki; Edyta Stasiek; Maria E Figueroa; Jacob L Glass; Quan Chen; Cristina Montagna; Eli Hatchwell; Rebecca R Selzer; Todd A Richmond; Roland D Green; Ari Melnick; John M Greally
Journal:  Genome Res       Date:  2006-06-29       Impact factor: 9.043

2.  An analytical pipeline for genomic representations used for cytosine methylation studies.

Authors:  Reid F Thompson; Mark Reimers; Batbayar Khulan; Mathieu Gissot; Todd A Richmond; Quan Chen; Xin Zheng; Kami Kim; John M Greally
Journal:  Bioinformatics       Date:  2008-03-18       Impact factor: 6.937

3.  Nonallelic transvection of multiple imprinted loci is organized by the H19 imprinting control region during germline development.

Authors:  Kuljeet Singh Sandhu; Chengxi Shi; Mikael Sjölinder; Zhihu Zhao; Anita Göndör; Liang Liu; Vijay K Tiwari; Sylvain Guibert; Lina Emilsson; Marta P Imreh; Rolf Ohlsson
Journal:  Genes Dev       Date:  2009-11-15       Impact factor: 11.361

4.  A high-throughput DNA methylation analysis of a single cell.

Authors:  Martin Kantlehner; Roland Kirchner; Petra Hartmann; Joachim W Ellwart; Marianna Alunni-Fabbroni; Axel Schumacher
Journal:  Nucleic Acids Res       Date:  2011-01-25       Impact factor: 16.971

5.  Spatial, temporal and interindividual epigenetic variation of functionally important DNA methylation patterns.

Authors:  Eberhard Schneider; Galyna Pliushch; Nady El Hajj; Danuta Galetzka; Alexander Puhl; Martin Schorsch; Katrin Frauenknecht; Thomas Riepert; Achim Tresch; Annette M Müller; Wiltrud Coerdt; Ulrich Zechner; Thomas Haaf
Journal:  Nucleic Acids Res       Date:  2010-03-01       Impact factor: 16.971

Review 6.  Experimental approaches to the study of epigenomic dysregulation in ageing.

Authors:  Reid F Thompson; Melissa J Fazzari; John M Greally
Journal:  Exp Gerontol       Date:  2010-01-10       Impact factor: 4.032

7.  CpG methylation analysis--current status of clinical assays and potential applications in molecular diagnostics: a report of the Association for Molecular Pathology.

Authors:  Antonia R Sepulveda; Dan Jones; Shuji Ogino; Wade Samowitz; Margaret L Gulley; Robin Edwards; Victor Levenson; Victoria M Pratt; Bin Yang; Khedoudja Nafa; Liying Yan; Patrick Vitazka
Journal:  J Mol Diagn       Date:  2009-06-18       Impact factor: 5.568

8.  Quantitative gene analysis of methylation and expression (Q-GAME) in fresh or fixed cells and tissues.

Authors:  Jianqiang Wu; Katrin A Salva; Nathalie Stutz; B Jack Longley; Vladimir S Spiegelman; Gary S Wood
Journal:  Exp Dermatol       Date:  2014-05       Impact factor: 3.960

9.  CTCF binding at the H19 imprinting control region mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to Igf2.

Authors:  Sreenivasulu Kurukuti; Vijay Kumar Tiwari; Gholamreza Tavoosidana; Elena Pugacheva; Adele Murrell; Zhihu Zhao; Victor Lobanenkov; Wolf Reik; Rolf Ohlsson
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-30       Impact factor: 11.205

10.  An Alu element-associated hypermethylation variant of the POMC gene is associated with childhood obesity.

Authors:  Peter Kuehnen; Mona Mischke; Susanna Wiegand; Christine Sers; Bernhard Horsthemke; Susanne Lau; Thomas Keil; Young-Ae Lee; Annette Grueters; Heiko Krude
Journal:  PLoS Genet       Date:  2012-03-15       Impact factor: 5.917

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