Literature DB >> 11687653

Internal initiation in Saccharomyces cerevisiae mediated by an initiator tRNA/eIF2-independent internal ribosome entry site element.

S R Thompson1, K D Gulyas, P Sarnow.   

Abstract

Internal initiation of translation can be mediated by specific internal ribosome entry site (IRES) elements that are located in certain mammalian and viral mRNA molecules. Thus far, these mammalian cellular and viral IRES elements have not been shown to function in the yeast Saccharomyces cerevisiae. We report here that a recently discovered IRES located in the genome of cricket paralysis virus can direct the efficient translation of a second URA3 cistron in dicistronic mRNAs in S. cerevisiae, thereby conferring uracil-independent growth. Curiously, the IRES functions poorly in wild-type yeast but functions efficiently either in the presence of constitutive expression of the eIF2 kinase GCN2 or in cells that have two initiator tRNA(met) genes disrupted. Both of these conditions have been shown to lower the amounts of ternary eIF2-GTP/initiator tRNA(met) complexes. Furthermore, tRNA(met)-independent initiation was also observed in translation-competent extracts prepared from S. cerevisiae in the presence of edeine, a compound that has been shown to interfere with start codon recognition by ribosomal subunits carrying ternary complexes. Therefore, the cricket paralysis virus IRES is likely to recruit ribosomes by internal initiation in S. cerevisiae in the absence of eIF2 and initiator tRNA(met), by the same mechanism of factor-independent ribosome recruitment used in mammalian cells. These findings will allow the use of yeast genetics to determine the mechanism of internal ribosome entry.

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Year:  2001        PMID: 11687653      PMCID: PMC60809          DOI: 10.1073/pnas.241286698

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  23 in total

1.  Novel fluorescence-based screen to identify small synthetic internal ribosome entry site elements.

Authors:  A Venkatesan; A Dasgupta
Journal:  Mol Cell Biol       Date:  2001-04       Impact factor: 4.272

2.  Identification of two short internal ribosome entry sites selected from libraries of random oligonucleotides.

Authors:  G C Owens; S A Chappell; V P Mauro; G M Edelman
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-13       Impact factor: 11.205

3.  Initiation of protein synthesis from the A site of the ribosome.

Authors:  J E Wilson; T V Pestova; C U Hellen; P Sarnow
Journal:  Cell       Date:  2000-08-18       Impact factor: 41.582

4.  Identification of eukaryotic mRNAs that are translated at reduced cap binding complex eIF4F concentrations using a cDNA microarray.

Authors:  G Johannes; M S Carter; M B Eisen; P O Brown; P Sarnow
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-09       Impact factor: 11.205

5.  Dual function of the messenger RNA cap structure in poly(A)-tail-promoted translation in yeast.

Authors:  T Preiss; M W Hentze
Journal:  Nature       Date:  1998-04-02       Impact factor: 49.962

6.  Starved Saccharomyces cerevisiae cells have the capacity to support internal initiation of translation.

Authors:  I Paz; L Abramovitz; M Choder
Journal:  J Biol Chem       Date:  1999-07-30       Impact factor: 5.157

7.  Naturally occurring dicistronic cricket paralysis virus RNA is regulated by two internal ribosome entry sites.

Authors:  J E Wilson; M J Powell; S E Hoover; P Sarnow
Journal:  Mol Cell Biol       Date:  2000-07       Impact factor: 4.272

8.  Transcript leader regions of two Saccharomyces cerevisiae mRNAs contain internal ribosome entry sites that function in living cells.

Authors:  W Zhou; G M Edelman; V P Mauro
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-13       Impact factor: 11.205

Review 9.  Posttranscriptional control of gene expression in yeast.

Authors:  J E McCarthy
Journal:  Microbiol Mol Biol Rev       Date:  1998-12       Impact factor: 11.056

Review 10.  Inhibition of internal entry site (IRES)-mediated translation by a small yeast RNA: a novel strategy to block hepatitis C virus protein synthesis.

Authors:  S Das; M Ott; A Yamane; A Venkatesan; S Gupta; A Dasgupta
Journal:  Front Biosci       Date:  1998-12-01
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  72 in total

1.  Unleashing yeast genetics on a factor-independent mechanism of internal translation initiation.

Authors:  A G Hinnebusch
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-06       Impact factor: 11.205

2.  Structural elements in the internal ribosome entry site of Plautia stali intestine virus responsible for binding with ribosomes.

Authors:  Takashi Nishiyama; Hiroshi Yamamoto; Norihiro Shibuya; Yoshinori Hatakeyama; Akira Hachimori; Toshio Uchiumi; Nobuhiko Nakashima
Journal:  Nucleic Acids Res       Date:  2003-05-01       Impact factor: 16.971

3.  Ribosome recycling step in yeast cytoplasmic protein synthesis is catalyzed by eEF3 and ATP.

Authors:  Shinya Kurata; Klaus H Nielsen; Sarah F Mitchell; Jon R Lorsch; Akira Kaji; Hideko Kaji
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-01       Impact factor: 11.205

4.  Translation elongation after assembly of ribosomes on the Cricket paralysis virus internal ribosomal entry site without initiation factors or initiator tRNA.

Authors:  Tatyana V Pestova; Christopher U T Hellen
Journal:  Genes Dev       Date:  2003-01-15       Impact factor: 11.361

5.  Spliceosome discards intermediates via the DEAH box ATPase Prp43p.

Authors:  Rabiah M Mayas; Hiroshi Maita; Daniel R Semlow; Jonathan P Staley
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-12       Impact factor: 11.205

6.  A preformed compact ribosome-binding domain in the cricket paralysis-like virus IRES RNAs.

Authors:  David Costantino; Jeffrey S Kieft
Journal:  RNA       Date:  2005-03       Impact factor: 4.942

7.  Translation initiation factors are not required for Dicistroviridae IRES function in vivo.

Authors:  Nilsa Deniz; Erik M Lenarcic; Dori M Landry; Sunnie R Thompson
Journal:  RNA       Date:  2009-03-19       Impact factor: 4.942

8.  Dicistronic regulation of fluorescent proteins in the budding yeast Saccharomyces cerevisiae.

Authors:  Sarah R Edwards; Thomas J Wandless
Journal:  Yeast       Date:  2010-04       Impact factor: 3.239

9.  Position of the CrPV IRES on the 40S subunit and factor dependence of IRES/80S ribosome assembly.

Authors:  Tatyana V Pestova; Ivan B Lomakin; Christopher U T Hellen
Journal:  EMBO Rep       Date:  2004-09       Impact factor: 8.807

10.  RPS25 is essential for translation initiation by the Dicistroviridae and hepatitis C viral IRESs.

Authors:  Dori M Landry; Marla I Hertz; Sunnie R Thompson
Journal:  Genes Dev       Date:  2009-12-01       Impact factor: 11.361

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