Literature DB >> 12533507

Translation elongation after assembly of ribosomes on the Cricket paralysis virus internal ribosomal entry site without initiation factors or initiator tRNA.

Tatyana V Pestova1, Christopher U T Hellen.   

Abstract

Reconstitution of translation elongation from purified components confirmed that ribosomes that assembled on the Cricket paralysis virus intercistronic internal ribosomal entry site (IRES) without the involvement of initiation factors or initiator tRNA were active in elongation and are, therefore, true initiation complexes. The first elongation cycle occurred without peptide bond formation on 80S ribosomes that did not contain tRNA in the P site. It required elongation factors 1A and 2 and A site-cognate aminoacylated tRNA. Cycloheximide arrested ribosomes on the IRES only after two cycles of elongation, when the first deacylated tRNA reached the E-site after translocation from the A-site.

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Year:  2003        PMID: 12533507      PMCID: PMC195975          DOI: 10.1101/gad.1040803

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  31 in total

1.  Crystal structure of the ribosome at 5.5 A resolution.

Authors:  M M Yusupov; G Z Yusupova; A Baucom; K Lieberman; T N Earnest; J H Cate; H F Noller
Journal:  Science       Date:  2001-03-29       Impact factor: 47.728

2.  The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.

Authors:  N Ban; P Nissen; J Hansen; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

Review 3.  Internal ribosome entry sites in eukaryotic mRNA molecules.

Authors:  C U Hellen; P Sarnow
Journal:  Genes Dev       Date:  2001-07-01       Impact factor: 11.361

4.  Initiation of protein synthesis from the A site of the ribosome.

Authors:  J E Wilson; T V Pestova; C U Hellen; P Sarnow
Journal:  Cell       Date:  2000-08-18       Impact factor: 41.582

5.  The joining of ribosomal subunits in eukaryotes requires eIF5B.

Authors:  T V Pestova; I B Lomakin; J H Lee; S K Choi; T E Dever; C U Hellen
Journal:  Nature       Date:  2000-01-20       Impact factor: 49.962

6.  Sequence requirements for translation initiation of Rhopalosiphum padi virus ORF2.

Authors:  L L Domier; N K McCoppin; C J D'Arcy
Journal:  Virology       Date:  2000-03-15       Impact factor: 3.616

7.  Hepatitis C virus IRES RNA-induced changes in the conformation of the 40s ribosomal subunit.

Authors:  C M Spahn; J S Kieft; R A Grassucci; P A Penczek; K Zhou; J A Doudna; J Frank
Journal:  Science       Date:  2001-03-09       Impact factor: 47.728

8.  Cycloheximide resistance conferred by novel mutations in ribosomal protein L41 of Chlamydomonas reinhardtii.

Authors:  D R Stevens; A Atteia; L G Franzén; S Purton
Journal:  Mol Gen Genet       Date:  2001-02

9.  Naturally occurring dicistronic cricket paralysis virus RNA is regulated by two internal ribosome entry sites.

Authors:  J E Wilson; M J Powell; S E Hoover; P Sarnow
Journal:  Mol Cell Biol       Date:  2000-07       Impact factor: 4.272

10.  Translation initiation at the CUU codon is mediated by the internal ribosome entry site of an insect picorna-like virus in vitro.

Authors:  J Sasaki; N Nakashima
Journal:  J Virol       Date:  1999-02       Impact factor: 5.103

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  117 in total

1.  Structural elements in the internal ribosome entry site of Plautia stali intestine virus responsible for binding with ribosomes.

Authors:  Takashi Nishiyama; Hiroshi Yamamoto; Norihiro Shibuya; Yoshinori Hatakeyama; Akira Hachimori; Toshio Uchiumi; Nobuhiko Nakashima
Journal:  Nucleic Acids Res       Date:  2003-05-01       Impact factor: 16.971

2.  Divergent tRNA-like element supports initiation, elongation, and termination of protein biosynthesis.

Authors:  Eric Jan; Terri Goss Kinzy; Peter Sarnow
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-12       Impact factor: 11.205

3.  Alternative reading frame selection mediated by a tRNA-like domain of an internal ribosome entry site.

Authors:  Qian Ren; Qing S Wang; Andrew E Firth; Mandy M Y Chan; Joost W Gouw; M Marta Guarna; Leonard J Foster; John F Atkins; Eric Jan
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-13       Impact factor: 11.205

4.  Modular domains of the Dicistroviridae intergenic internal ribosome entry site.

Authors:  Christopher J Jang; Eric Jan
Journal:  RNA       Date:  2010-04-27       Impact factor: 4.942

5.  Smaug assembles an ATP-dependent stable complex repressing nanos mRNA translation at multiple levels.

Authors:  Mandy Jeske; Bodo Moritz; Alexander Anders; Elmar Wahle
Journal:  EMBO J       Date:  2010-11-16       Impact factor: 11.598

6.  MicroRNAs control translation initiation by inhibiting eukaryotic initiation factor 4E/cap and poly(A) tail function.

Authors:  David T Humphreys; Belinda J Westman; David I K Martin; Thomas Preiss
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-15       Impact factor: 11.205

7.  Severe acute respiratory syndrome coronavirus protein nsp1 is a novel eukaryotic translation inhibitor that represses multiple steps of translation initiation.

Authors:  Kumari G Lokugamage; Krishna Narayanan; Cheng Huang; Shinji Makino
Journal:  J Virol       Date:  2012-10-03       Impact factor: 5.103

8.  Translation initiation factors are not required for Dicistroviridae IRES function in vivo.

Authors:  Nilsa Deniz; Erik M Lenarcic; Dori M Landry; Sunnie R Thompson
Journal:  RNA       Date:  2009-03-19       Impact factor: 4.942

9.  Position of the CrPV IRES on the 40S subunit and factor dependence of IRES/80S ribosome assembly.

Authors:  Tatyana V Pestova; Ivan B Lomakin; Christopher U T Hellen
Journal:  EMBO Rep       Date:  2004-09       Impact factor: 8.807

10.  RPS25 is essential for translation initiation by the Dicistroviridae and hepatitis C viral IRESs.

Authors:  Dori M Landry; Marla I Hertz; Sunnie R Thompson
Journal:  Genes Dev       Date:  2009-12-01       Impact factor: 11.361

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