Literature DB >> 11682307

The neutral theory in the genomic era.

J C Fay1, C I Wu.   

Abstract

A number of tests have been developed to detect positive selection at the molecular level. These tests are based on DNA polymorphism within and divergence between species. Applications of these tests have revealed a large collection of genes that have evolved under positive selection and some general insights into adaptive evolution. Recently, these tests have been applied on a genomic scale and have provided estimates of the frequency of adaptive substitutions and a critical test of the neutral theory.

Mesh:

Year:  2001        PMID: 11682307     DOI: 10.1016/s0959-437x(00)00247-1

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  29 in total

1.  The signature of positive selection at randomly chosen loci.

Authors:  Molly Przeworski
Journal:  Genetics       Date:  2002-03       Impact factor: 4.562

2.  Interrogating a high-density SNP map for signatures of natural selection.

Authors:  Joshua M Akey; Ge Zhang; Kun Zhang; Li Jin; Mark D Shriver
Journal:  Genome Res       Date:  2002-12       Impact factor: 9.043

3.  Genome-wide molecular clock and horizontal gene transfer in bacterial evolution.

Authors:  Pavel S Novichkov; Marina V Omelchenko; Mikhail S Gelfand; Andrei A Mironov; Yuri I Wolf; Eugene V Koonin
Journal:  J Bacteriol       Date:  2004-10       Impact factor: 3.490

4.  Adaptive evolution of scorpion sodium channel toxins.

Authors:  Shunyi Zhu; Frank Bosmans; Jan Tytgat
Journal:  J Mol Evol       Date:  2004-02       Impact factor: 2.395

5.  Effective population size is positively correlated with levels of adaptive divergence among annual sunflowers.

Authors:  Jared L Strasburg; Nolan C Kane; Andrew R Raduski; Aurélie Bonin; Richard Michelmore; Loren H Rieseberg
Journal:  Mol Biol Evol       Date:  2010-10-15       Impact factor: 16.240

6.  Hypervariable noncoding sequences in Saccharomyces cerevisiae.

Authors:  Justin C Fay; Joseph A Benavides
Journal:  Genetics       Date:  2005-06-14       Impact factor: 4.562

7.  Correlation between Ka/Ks and Ks is related to substitution model and evolutionary lineage.

Authors:  Jun Li; Zhang Zhang; Søren Vang; Jun Yu; Gane Ka-Shu Wong; Jun Wang
Journal:  J Mol Evol       Date:  2009-03-24       Impact factor: 2.395

8.  A microsatellite variability screen for positive selection associated with the "out of Africa" habitat expansion of Drosophila melanogaster.

Authors:  M O Kauer; D Dieringer; C Schlötterer
Journal:  Genetics       Date:  2003-11       Impact factor: 4.562

9.  Adaptive genic evolution in the Drosophila genomes.

Authors:  Joshua A Shapiro; Wei Huang; Chenhui Zhang; Melissa J Hubisz; Jian Lu; David A Turissini; Shu Fang; Hurng-Yi Wang; Richard R Hudson; Rasmus Nielsen; Zhu Chen; Chung-I Wu
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-06       Impact factor: 11.205

10.  Susceptibility loci for murine HIV-associated nephropathy encode trans-regulators of podocyte gene expression.

Authors:  Natalia Papeta; Ka-Tak Chan; Sindhuri Prakash; Jeremiah Martino; Krzysztof Kiryluk; David Ballard; Leslie A Bruggeman; Rachelle Frankel; Zongyu Zheng; Paul E Klotman; Hongyu Zhao; Vivette D D'Agati; Richard P Lifton; Ali G Gharavi
Journal:  J Clin Invest       Date:  2009-04-20       Impact factor: 14.808

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