Literature DB >> 11604725

An object-oriented model for representing semantic locality in the UMLS.

O Bodenreider1.   

Abstract

Several information models have been developed for the Unified Medical Language System (UMLS). While some models are term-oriented, a knowledge-oriented model is needed for representing semantic locality, i.e. the various semantic links among concepts. We propose an object-oriented model in which the semantic features of the UMLS are made available through four major classes for representing Metathesaurus concepts, semantic types, inter-concept relationships and Semantic Network relationships. Additional semantic methods for reducing the complexity of the hierarchical relationships represented in the UMLS are proposed. Implementation details are presented, as well as examples of use. The interest of this approach is discussed.

Mesh:

Year:  2001        PMID: 11604725      PMCID: PMC4296525     

Source DB:  PubMed          Journal:  Stud Health Technol Inform        ISSN: 0926-9630


  13 in total

1.  Representing the UMLS as an object-oriented database: modeling issues and advantages.

Authors:  H Gu; Y Perl; J Geller; M Halper; L M Liu; J J Cimino
Journal:  J Am Med Inform Assoc       Date:  2000 Jan-Feb       Impact factor: 4.497

2.  Terminology Query Language: a server interface for concept-oriented terminology systems.

Authors:  M A Hogarth; M Gertz; F A Gorin
Journal:  Proc AMIA Symp       Date:  2000

3.  The NLM Indexing Initiative.

Authors:  A R Aronson; O Bodenreider; H F Chang; S M Humphrey; J G Mork; S J Nelson; T C Rindflesch; W J Wilbur
Journal:  Proc AMIA Symp       Date:  2000

4.  Aggregating UMLS semantic types for reducing conceptual complexity.

Authors:  A T McCray; A Burgun; O Bodenreider
Journal:  Stud Health Technol Inform       Date:  2001

5.  Methods for exploring the semantics of the relationships between co-occurring UMLS concepts.

Authors:  A Burgun; O Bodenreider
Journal:  Stud Health Technol Inform       Date:  2001

6.  Beyond synonymy: exploiting the UMLS semantics in mapping vocabularies.

Authors:  O Bodenreider; S J Nelson; W T Hole; H F Chang
Journal:  Proc AMIA Symp       Date:  1998

7.  Evaluation of the Unified Medical Language System as a medical knowledge source.

Authors:  O Bodenreider; A Burgun; G Botti; M Fieschi; P Le Beux; F Kohler
Journal:  J Am Med Inform Assoc       Date:  1998 Jan-Feb       Impact factor: 4.497

8.  Utilizing OODB schema modeling for vocabulary management.

Authors:  H Gu; J J Cimino; M Halper; J Geller; Y Perl
Journal:  Proc AMIA Annu Fall Symp       Date:  1996

9.  The Unified Medical Language System.

Authors:  D A Lindberg; B L Humphreys; A T McCray
Journal:  Methods Inf Med       Date:  1993-08       Impact factor: 2.176

10.  ASN.1: defining a grammar for the UMLS knowledge sources.

Authors:  A T McCray; G Divita
Journal:  Proc Annu Symp Comput Appl Med Care       Date:  1995
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  7 in total

1.  Methods for exploring the semantics of the relationships between co-occurring UMLS concepts.

Authors:  A Burgun; O Bodenreider
Journal:  Stud Health Technol Inform       Date:  2001

2.  The UMLS knowledge source server: an object model for delivering UMLS data.

Authors:  Anantha Bangalore; Karen E Thorn; Carolyn Tilley; Lee Peters
Journal:  AMIA Annu Symp Proc       Date:  2003

3.  Auditing as part of the terminology design life cycle.

Authors:  Hua Min; Yehoshua Perl; Yan Chen; Michael Halper; James Geller; Yue Wang
Journal:  J Am Med Inform Assoc       Date:  2006-08-23       Impact factor: 4.497

4.  Expanding the extent of a UMLS semantic type via group neighborhood auditing.

Authors:  Yan Chen; Huanying Gu; Yehoshua Perl; Michael Halper; Junchuan Xu
Journal:  J Am Med Inform Assoc       Date:  2009-06-30       Impact factor: 4.497

5.  A study of terminology auditors' performance for UMLS semantic type assignments.

Authors:  Huanying Helen Gu; Gai Elhanan; Yehoshua Perl; George Hripcsak; James J Cimino; Julia Xu; Yan Chen; James Geller; C Paul Morrey
Journal:  J Biomed Inform       Date:  2012-06-09       Impact factor: 6.317

6.  Concepts and synonymy in the UMLS Metathesaurus.

Authors:  Gary H Merrill
Journal:  J Biomed Discov Collab       Date:  2009-10-14

7.  The Neighborhood Auditing Tool: a hybrid interface for auditing the UMLS.

Authors:  C Paul Morrey; James Geller; Michael Halper; Yehoshua Perl
Journal:  J Biomed Inform       Date:  2009-06       Impact factor: 6.317

  7 in total

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