Literature DB >> 22687822

A study of terminology auditors' performance for UMLS semantic type assignments.

Huanying Helen Gu1, Gai Elhanan, Yehoshua Perl, George Hripcsak, James J Cimino, Julia Xu, Yan Chen, James Geller, C Paul Morrey.   

Abstract

Auditing healthcare terminologies for errors requires human experts. In this paper, we present a study of the performance of auditors looking for errors in the semantic type assignments of complex UMLS concepts. In this study, concepts are considered complex whenever they are assigned combinations of semantic types. Past research has shown that complex concepts have a higher likelihood of errors. The results of this study indicate that individual auditors are not reliable when auditing such concepts and their performance is low, according to various metrics. These results confirm the outcomes of an earlier pilot study. They imply that to achieve an acceptable level of reliability and performance, when auditing such concepts of the UMLS, several auditors need to be assigned the same task. A mechanism is then needed to combine the possibly differing opinions of the different auditors into a final determination. In the current study, in contrast to our previous work, we used a majority mechanism for this purpose. For a sample of 232 complex UMLS concepts, the majority opinion was found reliable and its performance for accuracy, recall, precision and the F-measure was found statistically significantly higher than the average performance of individual auditors.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22687822      PMCID: PMC3504177          DOI: 10.1016/j.jbi.2012.05.006

Source DB:  PubMed          Journal:  J Biomed Inform        ISSN: 1532-0464            Impact factor:   6.317


  28 in total

1.  Reference standards, judges, and comparison subjects: roles for experts in evaluating system performance.

Authors:  George Hripcsak; Adam Wilcox
Journal:  J Am Med Inform Assoc       Date:  2002 Jan-Feb       Impact factor: 4.497

2.  Auditing the UMLS for redundant classifications.

Authors:  Yi Peng; Michael H Halper; Yehoshua Perl; James Geller
Journal:  Proc AMIA Symp       Date:  2002

3.  Auditing concept categorizations in the UMLS.

Authors:  Huanying Gu; Yehoshua Perl; Gai Elhanan; Hua Min; Li Zhang; Yi Peng
Journal:  Artif Intell Med       Date:  2004-05       Impact factor: 5.326

4.  Integrating SNOMED CT into the UMLS: an exploration of different views of synonymy and quality of editing.

Authors:  Kin Wah Fung; William T Hole; Stuart J Nelson; Suresh Srinivasan; Tammy Powell; Laura Roth
Journal:  J Am Med Inform Assoc       Date:  2005-03-31       Impact factor: 4.497

5.  Approaches to eliminating cycles in the UMLS Metathesaurus: naïve vs. formal.

Authors:  Fleur Mougin; Olivier Bodenreider
Journal:  AMIA Annu Symp Proc       Date:  2005

Review 6.  A review of auditing methods applied to the content of controlled biomedical terminologies.

Authors:  Xinxin Zhu; Jung-Wei Fan; David M Baorto; Chunhua Weng; James J Cimino
Journal:  J Biomed Inform       Date:  2009-03-12       Impact factor: 6.317

7.  Expanding the extent of a UMLS semantic type via group neighborhood auditing.

Authors:  Yan Chen; Huanying Gu; Yehoshua Perl; Michael Halper; Junchuan Xu
Journal:  J Am Med Inform Assoc       Date:  2009-06-30       Impact factor: 4.497

Review 8.  Auditing complex concepts of SNOMED using a refined hierarchical abstraction network.

Authors:  Yue Wang; Michael Halper; Duo Wei; Huanying Gu; Yehoshua Perl; Junchuan Xu; Gai Elhanan; Yan Chen; Kent A Spackman; James T Case; George Hripcsak
Journal:  J Biomed Inform       Date:  2011-09-01       Impact factor: 6.317

9.  Structural group-based auditing of missing hierarchical relationships in UMLS.

Authors:  Yan Chen; Huanying Helen Gu; Yehoshua Perl; James Geller
Journal:  J Biomed Inform       Date:  2008-08-20       Impact factor: 6.317

10.  A clinical terminology in the post modern era: pragmatic problem list development.

Authors:  C G Chute; P L Elkin; S H Fenton; G E Atkin
Journal:  Proc AMIA Symp       Date:  1998
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  8 in total

1.  A tribal abstraction network for SNOMED CT target hierarchies without attribute relationships.

Authors:  Christopher Ochs; James Geller; Yehoshua Perl; Yan Chen; Ankur Agrawal; James T Case; George Hripcsak
Journal:  J Am Med Inform Assoc       Date:  2014-10-20       Impact factor: 4.497

2.  Scalable quality assurance for large SNOMED CT hierarchies using subject-based subtaxonomies.

Authors:  Christopher Ochs; James Geller; Yehoshua Perl; Yan Chen; Junchuan Xu; Hua Min; James T Case; Zhi Wei
Journal:  J Am Med Inform Assoc       Date:  2014-10-21       Impact factor: 4.497

3.  Utilizing a structural meta-ontology for family-based quality assurance of the BioPortal ontologies.

Authors:  Christopher Ochs; Zhe He; Ling Zheng; James Geller; Yehoshua Perl; George Hripcsak; Mark A Musen
Journal:  J Biomed Inform       Date:  2016-03-14       Impact factor: 6.317

Review 4.  Abstraction networks for terminologies: Supporting management of "big knowledge".

Authors:  Michael Halper; Huanying Gu; Yehoshua Perl; Christopher Ochs
Journal:  Artif Intell Med       Date:  2015-04-02       Impact factor: 5.326

5.  Auditing the Assignments of Top-Level Semantic Types in the UMLS Semantic Network to UMLS Concepts.

Authors:  Zhe He; Yehoshua Perl; Gai Elhanan; Yan Chen; James Geller; Jiang Bian
Journal:  Proceedings (IEEE Int Conf Bioinformatics Biomed)       Date:  2017-12-18

6.  A unified software framework for deriving, visualizing, and exploring abstraction networks for ontologies.

Authors:  Christopher Ochs; James Geller; Yehoshua Perl; Mark A Musen
Journal:  J Biomed Inform       Date:  2016-06-23       Impact factor: 6.317

7.  Sculpting the UMLS Refined Semantic Network.

Authors:  Zhe He; C Paul Morrey; Yehoshua Perl; Gai Elhanan; Ling Chen; Yan Chen; James Geller
Journal:  Online J Public Health Inform       Date:  2014-10-16

Review 8.  A review of auditing techniques for the Unified Medical Language System.

Authors:  Ling Zheng; Zhe He; Duo Wei; Vipina Keloth; Jung-Wei Fan; Luke Lindemann; Xinxin Zhu; James J Cimino; Yehoshua Perl
Journal:  J Am Med Inform Assoc       Date:  2020-10-01       Impact factor: 4.497

  8 in total

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