Literature DB >> 11591695

Transcription-induced cytosine-to-thymine mutations are not dependent on sequence context of the target cytosine.

A Beletskii1, A S Bhagwat.   

Abstract

We showed previously that transcription of a plasmid-borne kan allele increases C-to-T mutations in the nontranscribed strand. Using two new plasmid-borne kan alleles, one cmp allele, and a chromosomal kan allele, we found in this study that transcription-induced mutations are not limited to specific genes, alleles, or locations and are likely to be a general property of transcript elongation in Escherichia coli.

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Year:  2001        PMID: 11591695      PMCID: PMC100146          DOI: 10.1128/JB.183.21.6491-6493.2001

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  16 in total

Review 1.  UPs and downs in bacterial transcription initiation: the role of the alpha subunit of RNA polymerase in promoter recognition.

Authors:  R L Gourse; W Ross; T Gaal
Journal:  Mol Microbiol       Date:  2000-08       Impact factor: 3.501

2.  Correlation between transcription and C to T mutations in the non-transcribed DNA strand.

Authors:  A Beletskii; A S Bhagwat
Journal:  Biol Chem       Date:  1998 Apr-May       Impact factor: 3.915

3.  Evidence for transition-state stabilization by serine-148 in the catalytic mechanism of chloramphenicol acetyltransferase.

Authors:  A Lewendon; I A Murray; W V Shaw; M R Gibbs; A G Leslie
Journal:  Biochemistry       Date:  1990-02-27       Impact factor: 3.162

4.  A sensitive genetic assay for the detection of cytosine deamination: determination of rate constants and the activation energy.

Authors:  L A Frederico; T A Kunkel; B R Shaw
Journal:  Biochemistry       Date:  1990-03-13       Impact factor: 3.162

5.  Heat-induced deamination of cytosine residues in deoxyribonucleic acid.

Authors:  T Lindahl; B Nyberg
Journal:  Biochemistry       Date:  1974-07-30       Impact factor: 3.162

6.  Mutations induced by bacteriophage T7 RNA polymerase and their effects on the composition of the T7 genome.

Authors:  A Beletskii; A Grigoriev; S Joyce; A S Bhagwat
Journal:  J Mol Biol       Date:  2000-07-28       Impact factor: 5.469

7.  Transcription-induced mutations: increase in C to T mutations in the nontranscribed strand during transcription in Escherichia coli.

Authors:  A Beletskii; A S Bhagwat
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-26       Impact factor: 11.205

8.  Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes.

Authors:  F W Studier; B A Moffatt
Journal:  J Mol Biol       Date:  1986-05-05       Impact factor: 5.469

9.  A bacteriophage lambda vector for cloning with BamHI and Sau3A.

Authors:  S Mizusawa; D F Ward
Journal:  Gene       Date:  1982-12       Impact factor: 3.688

10.  Vectors bearing a hybrid trp-lac promoter useful for regulated expression of cloned genes in Escherichia coli.

Authors:  E Amann; J Brosius; M Ptashne
Journal:  Gene       Date:  1983-11       Impact factor: 3.688

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  15 in total

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Review 2.  Evaluation of molecular models for the affinity maturation of antibodies: roles of cytosine deamination by AID and DNA repair.

Authors:  Mala Samaranayake; Janusz M Bujnicki; Michael Carpenter; Ashok S Bhagwat
Journal:  Chem Rev       Date:  2006-02       Impact factor: 60.622

3.  Codon Usage Pattern of Genes Involved in Central Nervous System.

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Journal:  Mol Neurobiol       Date:  2018-06-19       Impact factor: 5.590

4.  Genome-wide mapping of regions preferentially targeted by the human DNA-cytosine deaminase APOBEC3A using uracil-DNA pulldown and sequencing.

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Journal:  J Biol Chem       Date:  2019-08-19       Impact factor: 5.157

5.  Characterization of the Catalytic Domain of Human APOBEC3B and the Critical Structural Role for a Conserved Methionine.

Authors:  Sachini U Siriwardena; Thisari A Guruge; Ashok S Bhagwat
Journal:  J Mol Biol       Date:  2015-08-14       Impact factor: 5.469

6.  Transcription-associated mutagenesis increases protein sequence diversity more effectively than does random mutagenesis in Escherichia coli.

Authors:  Hyunchul Kim; Baek-Seok Lee; Masaru Tomita; Akio Kanai
Journal:  PLoS One       Date:  2010-05-10       Impact factor: 3.240

7.  DNA methylation and Mycoplasma genomes.

Authors:  Xuhua Xia
Journal:  J Mol Evol       Date:  2003       Impact factor: 2.395

8.  Transcription-dependent increase in multiple classes of base substitution mutations in Escherichia coli.

Authors:  Joanna Klapacz; Ashok S Bhagwat
Journal:  J Bacteriol       Date:  2002-12       Impact factor: 3.490

9.  Stress-Induced Mutagenesis.

Authors:  Ashley B Williams; Patricia L Foster
Journal:  EcoSal Plus       Date:  2012-11

10.  Human activation-induced cytidine deaminase causes transcription-dependent, strand-biased C to U deaminations.

Authors:  Anjum Sohail; Joanna Klapacz; Mala Samaranayake; Asad Ullah; Ashok S Bhagwat
Journal:  Nucleic Acids Res       Date:  2003-06-15       Impact factor: 16.971

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