Literature DB >> 16464021

Evaluation of molecular models for the affinity maturation of antibodies: roles of cytosine deamination by AID and DNA repair.

Mala Samaranayake1, Janusz M Bujnicki, Michael Carpenter, Ashok S Bhagwat.   

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Year:  2006        PMID： 16464021      PMCID： PMC4593474          DOI： 10.1021/cr040496t

Source DB:  PubMed          Journal:  Chem Rev        ISSN： 0009-2665            Impact factor:   60.622


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  142 in total

1.  Xeroderma pigmentosum variant (XP-V) correcting protein from HeLa cells has a thymine dimer bypass DNA polymerase activity.

Authors:  C Masutani; M Araki; A Yamada; R Kusumoto; T Nogimori; T Maekawa; S Iwai; F Hanaoka
Journal:  EMBO J       Date:  1999-06-15       Impact factor: 11.598

2.  Somatic mutation hotspots correlate with DNA polymerase eta error spectrum.

Authors:  I B Rogozin; Y I Pavlov; K Bebenek; T Matsuda; T A Kunkel
Journal:  Nat Immunol       Date:  2001-06       Impact factor: 25.606

3.  Domain organization of activation-induced cytidine deaminase.

Authors:  Jolanta Zaim; Andrzej M Kierzek
Journal:  Nat Immunol       Date:  2003-12       Impact factor: 25.606

4.  GeneSilico protein structure prediction meta-server.

Authors:  Michal A Kurowski; Janusz M Bujnicki
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

5.  Immunoglobulin isotype switching is inhibited and somatic hypermutation perturbed in UNG-deficient mice.

Authors:  Cristina Rada; Gareth T Williams; Hilde Nilsen; Deborah E Barnes; Tomas Lindahl; Michael S Neuberger
Journal:  Curr Biol       Date:  2002-10-15       Impact factor: 10.834

6.  Somatic hypermutation of immunoglobulin genes is linked to transcription initiation.

Authors:  A Peters; U Storb
Journal:  Immunity       Date:  1996-01       Impact factor: 31.745

7.  Somatic hypermutation does not require Rad54 and Rad54B-mediated homologous recombination.

Authors:  Linda Bross; Joanna Wesoly; Jean-Marie Buerstedde; Roland Kanaar; Heinz Jacobs
Journal:  Eur J Immunol       Date:  2003-02       Impact factor: 5.532

8.  Activation-induced cytidine deaminase (AID) deficiency causes the autosomal recessive form of the Hyper-IgM syndrome (HIGM2).

Authors:  P Revy; T Muto; Y Levy; F Geissmann; A Plebani; O Sanal; N Catalan; M Forveille; R Dufourcq-Labelouse; A Gennery; I Tezcan; F Ersoy; H Kayserili; A G Ugazio; N Brousse; M Muramatsu; L D Notarangelo; K Kinoshita; T Honjo; A Fischer; A Durandy
Journal:  Cell       Date:  2000-09-01       Impact factor: 41.582

9.  Different mismatch repair deficiencies all have the same effects on somatic hypermutation: intact primary mechanism accompanied by secondary modifications.

Authors:  N Kim; G Bozek; J C Lo; U Storb
Journal:  J Exp Med       Date:  1999-07-05       Impact factor: 14.307

10.  Increased hypermutation at G and C nucleotides in immunoglobulin variable genes from mice deficient in the MSH2 mismatch repair protein.

Authors:  Q H Phung; D B Winter; A Cranston; R E Tarone; V A Bohr; R Fishel; P J Gearhart
Journal:  J Exp Med       Date:  1998-06-01       Impact factor: 14.307
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  9 in total

1.  Genomic uracil homeostasis during normal B cell maturation and loss of this balance during B cell cancer development.

Authors:  Sophia Shalhout; Dania Haddad; Angela Sosin; Thomas C Holland; Ayad Al-Katib; Alberto Martin; Ashok S Bhagwat
Journal:  Mol Cell Biol       Date:  2014-08-25       Impact factor: 4.272

Review 2.  An overview of chemical processes that damage cellular DNA: spontaneous hydrolysis, alkylation, and reactions with radicals.

Authors:  Kent S Gates
Journal:  Chem Res Toxicol       Date:  2009-11       Impact factor: 3.739

3.  Mutator effects and mutation signatures of editing deaminases produced in bacteria and yeast.

Authors:  A G Lada; C Frahm Krick; S G Kozmin; V I Mayorov; T S Karpova; I B Rogozin; Y I Pavlov
Journal:  Biochemistry (Mosc)       Date:  2011-01       Impact factor: 2.487

4.  Transcriptional pausing and stalling causes multiple clustered mutations by human activation-induced deaminase.

Authors:  Chandrika Canugovi; Mala Samaranayake; Ashok S Bhagwat
Journal:  FASEB J       Date:  2008-09-04       Impact factor: 5.191

Review 5.  Transcription-associated mutagenesis.

Authors:  Sue Jinks-Robertson; Ashok S Bhagwat
Journal:  Annu Rev Genet       Date:  2014-09-10       Impact factor: 13.826

6.  Mutations in human AID differentially affect its ability to deaminate cytidine and 5-methylcytidine in ssDNA substrates in vitro.

Authors:  Lucyna Budzko; Paulina Jackowiak; Karol Kamel; Joanna Sarzynska; Janusz M Bujnicki; Marek Figlerowicz
Journal:  Sci Rep       Date:  2017-06-20       Impact factor: 4.379

Review 7.  Cytidine deamination-induced perpetual immunity to SAR-CoV-2 infection is a potential new therapeutic target.

Authors:  Asad Ullah; Neelam Mabood; Muhammad Maqbool; Luqman Khan; Mujib Ullah
Journal:  Int J Med Sci       Date:  2021-10-15       Impact factor: 3.738

8.  Efficient deamination of 5-methylcytosines in DNA by human APOBEC3A, but not by AID or APOBEC3G.

Authors:  Priyanga Wijesinghe; Ashok S Bhagwat
Journal:  Nucleic Acids Res       Date:  2012-07-13       Impact factor: 16.971

9.  Genome-wide mutation avalanches induced in diploid yeast cells by a base analog or an APOBEC deaminase.

Authors:  Artem G Lada; Elena I Stepchenkova; Irina S R Waisertreiger; Vladimir N Noskov; Alok Dhar; James D Eudy; Robert J Boissy; Masayuki Hirano; Igor B Rogozin; Youri I Pavlov
Journal:  PLoS Genet       Date:  2013-09-05       Impact factor: 5.917
  9 in total

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