Literature DB >> 11572775

Nucleosome sliding via TBP DNA binding in vivo.

S Lomvardas1, D Thanos.   

Abstract

Here, we show that a nucleosome obstructing transcription from the IFN-beta promoter slides in vivo in response to virus infection, thus exposing the previously masked TATA box and the initiation site, a requirement for transcriptional activation. Our experiments also revealed that this mode of chromatin remodeling is a two-step reaction. First, the enhanceosome recruits the SWI/SNF chromatin-remodeling complex that modifies the nucleosome to allow binding of TBP. Second, DNA bending is induced by TBP binding, and the nucleosome slides to a new position. Experiments with other DNA binding proteins demonstrated a strong correlation between the ability to bend DNA and nucleosome sliding, suggesting that the sliding is induced by the bend.

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Year:  2001        PMID: 11572775     DOI: 10.1016/s0092-8674(01)00490-1

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  82 in total

Review 1.  Disentangling the MYC web.

Authors:  David Levens
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-30       Impact factor: 11.205

Review 2.  Chromatin remodeling enzymes: taming the machines. Third in review series on chromatin dynamics.

Authors:  Craig L Peterson
Journal:  EMBO Rep       Date:  2002-04       Impact factor: 8.807

3.  SWI/SNF-dependent chromatin remodeling of RNR3 requires TAF(II)s and the general transcription machinery.

Authors:  Vishva Mitra Sharma; Bing Li; Joseph C Reese
Journal:  Genes Dev       Date:  2003-02-15       Impact factor: 11.361

4.  SWI/SNF-dependent long-range remodeling of yeast HIS3 chromatin.

Authors:  Yeonjung Kim; David J Clark
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-13       Impact factor: 11.205

5.  Dynamic properties of nucleosomes during thermal and ATP-driven mobilization.

Authors:  Andrew Flaus; Tom Owen-Hughes
Journal:  Mol Cell Biol       Date:  2003-11       Impact factor: 4.272

6.  Left-handedly curved DNA regulates accessibility to cis-DNA elements in chromatin.

Authors:  Jun-ichi Nishikawa; Miho Amano; Yoshiro Fukue; Shigeo Tanaka; Haruka Kishi; Yoshiko Hirota; Kinya Yoda; Takashi Ohyama
Journal:  Nucleic Acids Res       Date:  2003-11-15       Impact factor: 16.971

7.  GAGA factor and the TFIID complex collaborate in generating an open chromatin structure at the Drosophila melanogaster hsp26 promoter.

Authors:  Boris A Leibovitch; Quinn Lu; Lawrence R Benjamin; Yingyun Liu; David S Gilmour; Sarah C R Elgin
Journal:  Mol Cell Biol       Date:  2002-09       Impact factor: 4.272

8.  Targeted histone acetylation at the yeast CUP1 promoter requires the transcriptional activator, the TATA boxes, and the putative histone acetylase encoded by SPT10.

Authors:  Chang-Hui Shen; Benoit P Leblanc; Carolyn Neal; Ramin Akhavan; David J Clark
Journal:  Mol Cell Biol       Date:  2002-09       Impact factor: 4.272

9.  TFIID and human mediator coactivator complexes assemble cooperatively on promoter DNA.

Authors:  Kristina M Johnson; Jin Wang; Andrea Smallwood; Charina Arayata; Michael Carey
Journal:  Genes Dev       Date:  2002-07-15       Impact factor: 11.361

10.  An atomic model of the interferon-beta enhanceosome.

Authors:  Daniel Panne; Tom Maniatis; Stephen C Harrison
Journal:  Cell       Date:  2007-06-15       Impact factor: 41.582

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