Literature DB >> 19189102

Dense chromatin plates in metaphase chromosomes.

Isaac Gállego1, Pablo Castro-Hartmann, Juan Manuel Caravaca, Silvia Caño, Joan-Ramon Daban.   

Abstract

In a previous work we observed multilayered plate-like structures surrounding partially denatured HeLa chromosomes at metaphase ionic conditions. This unexpected finding has led us to carry out an extensive investigation of these structures. Our results show that plates can also be found in metaphase chromosomes from chicken lymphocytes. We have used atomic force microscopy (AFM) to image and investigate the mechanical properties of plates in aqueous solution. Plates are thin (approximately 6.5 nm each layer) but compact and resistant to penetration by the AFM tip: their Young's modulus is approximately 0.2 GPa and the stress required for surface penetration is approximately 0.03 GPa in the presence of Mg(2+) (5-20 mM). Low-ionic strength conditions produce emanation of chromatin fibers from the edges of uncrosslinked plates. These observations and AFM results obtained applying high forces indicate that the chromatin filament is tightly tethered inside the plates. Images of metal-shadowed plates and cryo-electron microscopy images of frozen-hydrated plates suggest that nucleosomes are tilted with respect to the plate surface to allow an interdigitation between the successive layers and a thickness reduction compatible with the observed plate height. The similarities between denatured plates from chicken chromosomes and aggregates of purified chromatin from chicken erythrocytes suggest that chromatin has intrinsic structural properties leading to plate formation. Scanning electron micrographs and images obtained with the 200-kV transmission microscope show that plates are the dominant component of compact chromatids. We propose that metaphase chromosomes are formed by many stacked plates perpendicular to the chromatid axis.

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Year:  2009        PMID: 19189102     DOI: 10.1007/s00249-008-0401-1

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  90 in total

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Authors:  Takefumi Sone; Megumi Iwano; Shouhei Kobayashi; Takeshi Ishihara; Naoto Hori; Hideaki Takata; Tatsuo Ushiki; Susumu Uchiyama; Kiichi Fukui
Journal:  Arch Histol Cytol       Date:  2002-12

3.  Mitotic chromosome scaffold structure: new approaches to an old controversy.

Authors:  Andrew S Belmont
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-02       Impact factor: 11.205

4.  EM measurements define the dimensions of the "30-nm" chromatin fiber: evidence for a compact, interdigitated structure.

Authors:  Philip J J Robinson; Louise Fairall; Van A T Huynh; Daniela Rhodes
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-14       Impact factor: 11.205

5.  Highly compact folding of chromatin induced by cellular cation concentrations. Evidence from atomic force microscopy studies in aqueous solution.

Authors:  Silvia Caño; Juan Manuel Caravaca; Marc Martín; Joan-Ramon Daban
Journal:  Eur Biophys J       Date:  2006-03-30       Impact factor: 1.733

6.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

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Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

7.  Structure of the 300A chromatin filament: X-ray diffraction from oriented samples.

Authors:  J Widom; A Klug
Journal:  Cell       Date:  1985-11       Impact factor: 41.582

8.  Partial denaturation of small chromatin fragments: direct evidence for the radial distribution of nucleosomes in folded chromatin fibers.

Authors:  A Bermúdez; S Bartolomé; J R Daban
Journal:  J Cell Sci       Date:  1998-06       Impact factor: 5.285

9.  Integration of cytogenetic landmarks into the draft sequence of the human genome.

Authors:  V G Cheung; N Nowak; W Jang; I R Kirsch; S Zhao; X N Chen; T S Furey; U J Kim; W L Kuo; M Olivier; J Conroy; A Kasprzyk; H Massa; R Yonescu; S Sait; C Thoreen; A Snijders; E Lemyre; J A Bailey; A Bruzel; W D Burrill; S M Clegg; S Collins; P Dhami; C Friedman; C S Han; S Herrick; J Lee; A H Ligon; S Lowry; M Morley; S Narasimhan; K Osoegawa; Z Peng; I Plajzer-Frick; B J Quade; D Scott; K Sirotkin; A A Thorpe; J W Gray; J Hudson; D Pinkel; T Ried; L Rowen; G L Shen-Ong; R L Strausberg; E Birney; D F Callen; J F Cheng; D R Cox; N A Doggett; N P Carter; E E Eichler; D Haussler; J R Korenberg; C C Morton; D Albertson; G Schuler; P J de Jong; B J Trask
Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

10.  Self-association of polynucleosome chains by macromolecular crowding.

Authors:  Ronald Hancock
Journal:  Eur Biophys J       Date:  2008-02-08       Impact factor: 2.095

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  7 in total

1.  Nanotribology results show that DNA forms a mechanically resistant 2D network in metaphase chromatin plates.

Authors:  Isaac Gállego; Gerard Oncins; Xavier Sisquella; Xavier Fernàndez-Busquets; Joan-Ramon Daban
Journal:  Biophys J       Date:  2010-12-15       Impact factor: 4.033

2.  Frozen-hydrated chromatin from metaphase chromosomes has an interdigitated multilayer structure.

Authors:  Andrea Chicano; Eva Crosas; Joaquín Otón; Roberto Melero; Benjamin D Engel; Joan-Ramon Daban
Journal:  EMBO J       Date:  2019-01-04       Impact factor: 11.598

3.  Self-assembly of thin plates from micrococcal nuclease-digested chromatin of metaphase chromosomes.

Authors:  Maria Milla; Joan-Ramon Daban
Journal:  Biophys J       Date:  2012-08-08       Impact factor: 4.033

4.  The energy components of stacked chromatin layers explain the morphology, dimensions and mechanical properties of metaphase chromosomes.

Authors:  Joan-Ramon Daban
Journal:  J R Soc Interface       Date:  2014-01-08       Impact factor: 4.118

5.  ChromEMT: Visualizing 3D chromatin structure and compaction in interphase and mitotic cells.

Authors:  Horng D Ou; Sébastien Phan; Thomas J Deerinck; Andrea Thor; Mark H Ellisman; Clodagh C O'Shea
Journal:  Science       Date:  2017-07-28       Impact factor: 47.728

Review 6.  Mitotic chromosome organization: General rules meet species-specific variability.

Authors:  Tomáš Beseda; Petr Cápal; Ivona Kubalová; Veit Schubert; Jaroslav Doležel; Hana Šimková
Journal:  Comput Struct Biotechnol J       Date:  2020-02-03       Impact factor: 7.271

7.  Stacked thin layers of metaphase chromatin explain the geometry of chromosome rearrangements and banding.

Authors:  Joan-Ramon Daban
Journal:  Sci Rep       Date:  2015-10-08       Impact factor: 4.379

  7 in total

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