Literature DB >> 11537863

Theory of hydrophobicity: transient cavities in molecular liquids.

L R Pratt1, A Pohorille.   

Abstract

Observation of the size distribution of transient cavities in computer simulations of water, n-hexane, and n-dodecane under benchtop conditions shows that the sizes of cavities are more sharply defined in liquid water but the most-probable-size cavities are about the same size in each of these liquids. The calculated solvent atomic density in contact with these cavities shows that water applies more force per unit area of cavity surface than do the hydrocarbon liquids. This contact density, or "squeezing" force, reaches a maximum near cavity diameters of 2.4 angstroms. The results for liquid water are compared to the predictions of simple theories and, in addition, to results for a reference simple liquid. The numerical data for water at a range of temperatures are analyzed to extract a surface free energy contribution to the work of formation of atomic-size cavities. Comparison with the liquid-vapor interfacial tensions of the model liquids studied here indicates that the surface free energies extracted for atomic-size cavities cannot be accurately identified with the macroscopic surface tensions of the systems.

Entities:  

Keywords:  NASA Center ARC; NASA Discipline Exobiology

Mesh:

Substances:

Year:  1992        PMID: 11537863      PMCID: PMC48790          DOI: 10.1073/pnas.89.7.2995

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  13 in total

1.  Cavities in molecular liquids and the theory of hydrophobic solubilities.

Authors:  A Pohorille; L R Pratt
Journal:  J Am Chem Soc       Date:  1990       Impact factor: 15.419

2.  Some factors in the interpretation of protein denaturation.

Authors:  W KAUZMANN
Journal:  Adv Protein Chem       Date:  1959

3.  The meaning of hydrophobicity.

Authors:  K A Dill
Journal:  Science       Date:  1990-10-12       Impact factor: 47.728

Review 4.  Dominant forces in protein folding.

Authors:  K A Dill
Journal:  Biochemistry       Date:  1990-08-07       Impact factor: 3.162

5.  Solvent reorganization contribution to the transfer thermodynamics of small nonpolar molecules.

Authors:  B Lee
Journal:  Biopolymers       Date:  1991-07       Impact factor: 2.505

6.  Common features of protein unfolding and dissolution of hydrophobic compounds.

Authors:  K P Murphy; P L Privalov; S J Gill
Journal:  Science       Date:  1990-02-02       Impact factor: 47.728

7.  The physical origin of the low solubility of nonpolar solutes in water.

Authors:  B Lee
Journal:  Biopolymers       Date:  1985-05       Impact factor: 2.505

Review 8.  Water and proteins. II. The location and dynamics of water in protein systems and its relation to their stability and properties.

Authors:  J T Edsall; H A McKenzie
Journal:  Adv Biophys       Date:  1983

9.  Reconciling the magnitude of the microscopic and macroscopic hydrophobic effects.

Authors:  K A Sharp; A Nicholls; R F Fine; B Honig
Journal:  Science       Date:  1991-04-05       Impact factor: 47.728

10.  Surface potential of the water liquid-vapor interface.

Authors:  M A Wilson; A Pohorille; L R Pratt
Journal:  J Chem Phys       Date:  1988-03-01       Impact factor: 3.488

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  19 in total

1.  An information theory model of hydrophobic interactions.

Authors:  G Hummer; S Garde; A E García; A Pohorille; L R Pratt
Journal:  Proc Natl Acad Sci U S A       Date:  1996-08-20       Impact factor: 11.205

2.  Inferring the hydrophobic interaction from the properties of neat water.

Authors:  B J Berne
Journal:  Proc Natl Acad Sci U S A       Date:  1996-08-20       Impact factor: 11.205

3.  Intramolecular Interactions Overcome Hydration to Drive the Collapse Transition of Gly15.

Authors:  D Asthagiri; Deepti Karandur; Dheeraj S Tomar; B Montgomery Pettitt
Journal:  J Phys Chem B       Date:  2017-08-21       Impact factor: 2.991

4.  Probing solvation decay length in order to characterize hydrophobicity-induced bead-bead attractive interactions in polymer chains.

Authors:  Siddhartha Das; Suman Chakraborty
Journal:  J Mol Model       Date:  2010-11-26       Impact factor: 1.810

5.  Hydrophobic hydration from small to large lengthscales: Understanding and manipulating the crossover.

Authors:  Sowmianarayanan Rajamani; Thomas M Truskett; Shekhar Garde
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-22       Impact factor: 11.205

6.  Molecular-scale hydrophobic interactions between hard-sphere reference solutes are attractive and endothermic.

Authors:  Mangesh I Chaudhari; Sinead A Holleran; Henry S Ashbaugh; Lawrence R Pratt
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-02       Impact factor: 11.205

7.  The pressure dependence of hydrophobic interactions is consistent with the observed pressure denaturation of proteins.

Authors:  G Hummer; S Garde; A E García; M E Paulaitis; L R Pratt
Journal:  Proc Natl Acad Sci U S A       Date:  1998-02-17       Impact factor: 11.205

8.  Atomic-scale analysis of the solvation thermodynamics of hydrophobic hydration.

Authors:  S R Durell; A Wallqvist
Journal:  Biophys J       Date:  1996-10       Impact factor: 4.033

9.  Solvation free energy of the peptide group: its model dependence and implications for the additive-transfer free-energy model of protein stability.

Authors:  Dheeraj S Tomar; D Asthagiri; Valéry Weber
Journal:  Biophys J       Date:  2013-09-17       Impact factor: 4.033

10.  On the origins of the hydrophobic effect: observations from simulations of n-dodecane in model solvents.

Authors:  A Wallqvist; D G Covell
Journal:  Biophys J       Date:  1996-08       Impact factor: 4.033

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