Literature DB >> 8889147

Atomic-scale analysis of the solvation thermodynamics of hydrophobic hydration.

S R Durell1, A Wallqvist.   

Abstract

Molecular dynamics simulations are used to model the transfer thermodynamics of krypton from the gas phase into water. Extra long, nanosecond simulations are required to reduce the statistical uncertainty of the calculated "solvation" enthalpy to an acceptable level. Thermodynamic integration is used to calculate the "solvation" free energy, which together with the enthalpy is used to calculate the "solvation" entropy. A comparison series of simulations are conducted using a single Lennard-Jones sphere model of water to identify the contribution of hydrogen bonding to the thermodynamic quantities. In contrast to the classical "iceberg" model of hydrophobic hydration, the favorable enthalpy change for the transfer process at room temperature is found to be due primarily to the strong van der Waals interaction between the solute and solvent. Although some stabilization of hydrogen bonding does occur in the solvation shell, this is overshadowed by a destabilization due to packing constraints. Similarly, whereas some of the unfavorable change in entropy is attributed to the reduced rotational motion of the solvation shell waters, the major component is due to a decrease in the number of positional arrangements associated with the translational motions.

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Year:  1996        PMID: 8889147      PMCID: PMC1233639          DOI: 10.1016/S0006-3495(96)79371-2

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  7 in total

1.  Theory of hydrophobicity: transient cavities in molecular liquids.

Authors:  L R Pratt; A Pohorille
Journal:  Proc Natl Acad Sci U S A       Date:  1992-04       Impact factor: 11.205

Review 2.  Dominant forces in protein folding.

Authors:  K A Dill
Journal:  Biochemistry       Date:  1990-08-07       Impact factor: 3.162

Review 3.  Free energy via molecular simulation: applications to chemical and biomolecular systems.

Authors:  D L Beveridge; F M DiCapua
Journal:  Annu Rev Biophys Biophys Chem       Date:  1989

4.  Free energy simulations.

Authors:  M Mezei; D L Beveridge
Journal:  Ann N Y Acad Sci       Date:  1986       Impact factor: 5.691

5.  Role of hydrogen bonds in hydrophobicity: the free energy of cavity formation in water models with and without the hydrogen bonds.

Authors:  B Madan; B Lee
Journal:  Biophys Chem       Date:  1994-08       Impact factor: 2.352

6.  A role for surface hydrophobicity in protein-protein recognition.

Authors:  L Young; R L Jernigan; D G Covell
Journal:  Protein Sci       Date:  1994-05       Impact factor: 6.725

7.  On the origins of the hydrophobic effect: observations from simulations of n-dodecane in model solvents.

Authors:  A Wallqvist; D G Covell
Journal:  Biophys J       Date:  1996-08       Impact factor: 4.033

  7 in total

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