Literature DB >> 11536826

Modelling of the prebiotic synthesis of oligopeptides: silicate catalysts help to overcome the critical stage.

K I Zamaraev1, V N Romannikov, R I Salganik, W A Wlassoff, V V Khramtsov.   

Abstract

On the basis of experimental studies of the initial stages of glycine oligomerization in aqueous suspension of zeolite and kaolinite catalysts, a model is suggested for the prebiotic synthesis of oligopeptides from alpha-amino acids. The formation of linear dipeptides by hydrolysis of one amide bond in the cyclic piperazinedione intermediate (formed from glycine spontaneously) is found to be the critical stage of the reaction. This stage is base catalyzed and its rate increases when pH of the medium goes up. The linear glycyl-glycine yield rises under effect of hydroxyl anions generated from different sources including insoluble silicates and soluble sodium bicarbonate. During prebiotic evolution silicates capable of cation-exchange can serve as local sources of the hydroxyl anions which dramatically accelerate formation of linear dipeptides from cyclic ones. Oligopeptides of higher molecular weight are then easily formed from the linear dipeptides at neutral pH, even in the absence of catalysts or sources of energy (e.g. such as light). The described catalytic synthesis could occur in the proximity of submarine hydrothermal vents.

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Year:  1997        PMID: 11536826     DOI: 10.1023/a:1006571800690

Source DB:  PubMed          Journal:  Orig Life Evol Biosph        ISSN: 0169-6149            Impact factor:   1.950


  19 in total

Review 1.  The role of cometary particle coalescence in chemical evolution.

Authors:  V R Oberbeck; C P McKay; T W Scattergood; G C Carle; J R Valentin
Journal:  Orig Life Evol Biosph       Date:  1989       Impact factor: 1.950

Review 2.  Origin of life--facing up to the physical setting.

Authors:  N R Pace
Journal:  Cell       Date:  1991-05-17       Impact factor: 41.582

3.  Origin of life: new ingredients suggested.

Authors:  R A Kerr
Journal:  Science       Date:  1980-10-03       Impact factor: 47.728

4.  Catalysis and prebiotic RNA synthesis.

Authors:  J P Ferris
Journal:  Orig Life Evol Biosph       Date:  1993-12       Impact factor: 1.950

5.  Theoretical investigation of the role of clay edges in prebiotic peptide bond formation. II. Structures and thermodynamics of the activated complex species.

Authors:  J R Collins; G H Loew; B T Luke; D H White
Journal:  Orig Life Evol Biosph       Date:  1988       Impact factor: 1.950

6.  Which organic compounds could have occurred on the prebiotic earth?

Authors:  S L Miller
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1987

7.  Peptide chain elongation: a possible role of montmorillonite in prebiotic synthesis of protein precursors.

Authors:  J Bujdák; K Faybíková; A Eder; Y Yongyai; B M Rode
Journal:  Orig Life Evol Biosph       Date:  1995-10       Impact factor: 1.950

8.  The prebiological paleoatmosphere: stability and composition.

Authors:  J S Levine; T R Augustsson; M Natarajan
Journal:  Orig Life       Date:  1982-09

9.  The polymerization of amino acid adenylates on sodium-montmorillonite with preadsorbed polypeptides.

Authors:  M Paecht-Horowitz; F R Eirich
Journal:  Orig Life Evol Biosph       Date:  1988       Impact factor: 1.950

10.  The role of metal ions in chemical evolution: polymerization of alanine and glycine in a cation-exchanged clay environment.

Authors:  J G Lawless; N Levi
Journal:  J Mol Evol       Date:  1979-11       Impact factor: 2.395

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  12 in total

Review 1.  Mineral surfaces, geochemical complexities, and the origins of life.

Authors:  Robert M Hazen; Dimitri A Sverjensky
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-04-14       Impact factor: 10.005

2.  Evolution of homochirality by epimerization of random peptide chains. A stochastic model.

Authors:  Peter Schmidt
Journal:  Orig Life Evol Biosph       Date:  2006-06-22       Impact factor: 1.950

3.  The origin and emergence of life under impact bombardment.

Authors:  Charles S Cockell
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-10-29       Impact factor: 6.237

4.  Amino acid interaction with and adsorption on clays: FT-IR and Mössbauer spectroscopy and X-ray diffractometry investigations.

Authors:  Luís O B Benetoli; Cláudio M D de Souza; Klébson L da Silva; Ivan G de Souza; Henrique de Santana; Andrea Paesano; Antonio C S da Costa; Cássia Thaïs B V Zaia; Dimas A M Zaia
Journal:  Orig Life Evol Biosph       Date:  2007-06-20       Impact factor: 1.950

Review 5.  Adsorption and polymerization of amino acids on mineral surfaces: a review.

Authors:  Jean-François Lambert
Journal:  Orig Life Evol Biosph       Date:  2008-03-15       Impact factor: 1.950

6.  Biomineralization: a proposed evolutionary origin for inorganic cofactors of enzymes.

Authors:  Mohammad Mahdi Najafpour
Journal:  Theory Biosci       Date:  2012-08-08       Impact factor: 1.919

7.  Oligomerization of glycine and alanine catalyzed by iron oxides: implications for prebiotic chemistry.

Authors:  Uma Shanker; Brij Bhushan; G Bhattacharjee
Journal:  Orig Life Evol Biosph       Date:  2012-02-29       Impact factor: 1.950

8.  Trimetaphosphate Activates Prebiotic Peptide Synthesis across a Wide Range of Temperature and pH.

Authors:  Izabela Sibilska; Yu Feng; Lingjun Li; John Yin
Journal:  Orig Life Evol Biosph       Date:  2018-09-29       Impact factor: 1.950

9.  Biochemical evolution. I. Polymerization On internal, organophilic silica surfaces of dealuminated zeolites and feldspars.

Authors:  J V Smith
Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-31       Impact factor: 11.205

10.  Formation of Diastereoisomeric Piperazine-2,5-dione from DL-Alanine in the Presence of Olivine and Water.

Authors:  Shigeshi Fuchida; Hiroshi Naraoka; Harue Masuda
Journal:  Orig Life Evol Biosph       Date:  2016-04-12       Impact factor: 1.950

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