Literature DB >> 11495248

A TROSY relayed HCCH-COSY experiment for correlating adenine H2/H8 resonances in uniformly 13C-labeled RNA molecules.

B Simon1, K Zanier, M Sattler.   

Abstract

A new TROSY relayed HCCH-COSY pulse sequence is introduced for correlating adenine H2 and H8 resonances in 13C-labeled RNA molecules. The pulse scheme provides substantial improvements in signal-to-noise compared to previously suggested experiments, and therefore will be suitable for NMR studies of larger RNA molecules. The experiment provides 13C chemical shifts for all carbon nuclei in the adenine base. This is advantageous for resolving spectral overlap in larger RNA molecules and provides a starting point for measuring additional parameters for these carbons in the adenine spin system.

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Year:  2001        PMID: 11495248     DOI: 10.1023/a:1011214914452

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  13 in total

1.  The role of coherence transfer efficiency in design of TROSY-type multidimensional NMR experiments.

Authors:  A Meissner; O W Sørensen
Journal:  J Magn Reson       Date:  1999-08       Impact factor: 2.229

2.  Transverse relaxation optimized triple-resonance NMR experiments for nucleic acids.

Authors:  R Fiala; J Czernek; V Sklenár
Journal:  J Biomol NMR       Date:  2000-04       Impact factor: 2.835

3.  Optimization of triple-resonance HCN experiments for application to larger RNA oligonucleotides.

Authors:  V Sklenár; T Dieckmann; S E Butcher; J Feigon
Journal:  J Magn Reson       Date:  1998-01       Impact factor: 2.229

4.  Optimization of three-dimensional TROSY-type HCCH NMR correlation of aromatic (1)H-(13)C groups in proteins.

Authors:  A Meissner; O W Sorensen
Journal:  J Magn Reson       Date:  1999-08       Impact factor: 2.229

5.  Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution.

Authors:  K Pervushin; R Riek; G Wider; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

6.  Preparation of 13C and 15N labelled RNAs for heteronuclear multi-dimensional NMR studies.

Authors:  E P Nikonowicz; A Sirr; P Legault; F M Jucker; L M Baer; A Pardi
Journal:  Nucleic Acids Res       Date:  1992-09-11       Impact factor: 16.971

7.  Preparation of isotopically labeled ribonucleotides for multidimensional NMR spectroscopy of RNA.

Authors:  R T Batey; M Inada; E Kujawinski; J D Puglisi; J R Williamson
Journal:  Nucleic Acids Res       Date:  1992-09-11       Impact factor: 16.971

8.  Sequential assignments in uniformly 13C- and 15N-labelled RNAs: the HC(N,P) and HC(N,P)-CCH-TOCSY experiments.

Authors:  R Ramachandran; C Sich; M Grüne; V Soskic; L R Brown
Journal:  J Biomol NMR       Date:  1996-05       Impact factor: 2.835

9.  Sequential backbone assignment in 13C-labeled DNA by the 1H, 13C, 31P triple-resonance experiment, HCP-CCH-COSY.

Authors:  S Tate; A Ono; M Kainosho
Journal:  J Magn Reson B       Date:  1995-01

10.  Correlation of the guanosine exchangeable and nonexchangeable base protons in 13C-/15N-labeled RNA with an HNC-TOCSY-CH experiment.

Authors:  J P Simorre; G R Zimmermann; L Mueller; A Pardi
Journal:  J Biomol NMR       Date:  1996-03       Impact factor: 2.835

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  15 in total

1.  New applications of 2D filtered/edited NOESY for assignment and structure elucidation of RNA and RNA-protein complexes.

Authors:  Robert D Peterson; Carla A Theimer; Haihong Wu; Juli Feigon
Journal:  J Biomol NMR       Date:  2004-01       Impact factor: 2.835

2.  New NMR experiments for RNA nucleobase resonance assignment and chemical shift analysis of an RNA UUCG tetraloop.

Authors:  Boris Fürtig; Christian Richter; Wolfgang Bermel; Harald Schwalbe
Journal:  J Biomol NMR       Date:  2004-01       Impact factor: 2.835

3.  Combining asymmetric 13C-labeling and isotopic filter/edit NOESY: a novel strategy for rapid and logical RNA resonance assignment.

Authors:  Regan M LeBlanc; Andrew P Longhini; Stuart F J Le Grice; Bruce A Johnson; Theodore K Dayie
Journal:  Nucleic Acids Res       Date:  2017-09-19       Impact factor: 16.971

Review 4.  Applications of NMR to structure determination of RNAs large and small.

Authors:  Ravi P Barnwal; Fan Yang; Gabriele Varani
Journal:  Arch Biochem Biophys       Date:  2017-06-16       Impact factor: 4.013

5.  Structure of the histone mRNA hairpin required for cell cycle regulation of histone gene expression.

Authors:  Katia Zanier; Ingrid Luyten; Catriona Crombie; Berndt Muller; Daniel Schümperli; Jens P Linge; Michael Nilges; Michael Sattler
Journal:  RNA       Date:  2002-01       Impact factor: 4.942

6.  Resolution enhanced homonuclear carbon decoupled triple resonance experiments for unambiguous RNA structural characterization.

Authors:  Kwaku T Dayie
Journal:  J Biomol NMR       Date:  2005-06       Impact factor: 2.835

7.  Experiments for correlating quaternary carbons in RNA bases.

Authors:  Radovan Fiala; Markéta L Munzarová; Vladimír Sklenár
Journal:  J Biomol NMR       Date:  2004-08       Impact factor: 2.835

8.  HNHC: a triple resonance experiment for correlating the H2, N1(N3) and C2 resonances in adenine nucleobases of 13C-, 15N-labeled RNA oligonucleotides.

Authors:  Jörg Rinnenthal; Harald Schwalbe
Journal:  J Biomol NMR       Date:  2009-05-08       Impact factor: 2.835

9.  Facilitated assignment of adenine H2 resonances in oligonucleotides using homonuclear long-range couplings.

Authors:  Jin Zhang; Alexander Spring; Markus W Germann
Journal:  J Am Chem Soc       Date:  2009-04-22       Impact factor: 15.419

10.  Strategy for automated NMR resonance assignment of RNA: application to 48-nucleotide K10.

Authors:  Barbara Krähenbühl; Peter Lukavsky; Gerhard Wider
Journal:  J Biomol NMR       Date:  2014-06-05       Impact factor: 2.835

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