Literature DB >> 11463621

Mesoscopic simulation of cell membrane damage, morphology change and rupture by nonionic surfactants.

R D Groot1, K L Rabone.   

Abstract

A new simulation method, dissipative particle dynamics, is applied to model biological membranes. In this method, several atoms are united into a single simulation particle. The solubility and compressibility of the various liquid components are reproduced by the simulation model. When applied to a bilayer of phosphatidylethanolamine, the membrane structure obtained matches quantitatively with full atomistic simulations and with experiments reported in the literature. The method is applied to investigate the cause of cell death when bacteria are exposed to nonionic surfactants. Mixed bilayers of lipid and nonionic surfactant were studied, and the diffusion of water through the bilayer was monitored. Small transient holes are seen to appear at 40% mole-fraction C(9)E(8), which become permanent holes between 60 and 70% surfactant. When C(12)E(6) is applied, permanent holes only arise at 90% mole-fraction surfactant. Some simulations have been carried out to determine the rupture properties of mixed bilayers of phosphatidylethanolamine and C(12)E(6). These simulations indicate that the area of a pure lipid bilayer can be increased by a factor 2. The inclusion of surfactant considerably reduces both the extensibility and the maximum stress that the bilayer can withstand. This may explain why dividing cells are more at risk than static cells.

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Year:  2001        PMID: 11463621      PMCID: PMC1301549          DOI: 10.1016/S0006-3495(01)75737-2

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  16 in total

1.  Hydrodynamics from dissipative particle dynamics.

Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1995-08

Review 2.  A computer perspective of membranes: molecular dynamics studies of lipid bilayer systems.

Authors:  D P Tieleman; S J Marrink; H J Berendsen
Journal:  Biochim Biophys Acta       Date:  1997-11-21

3.  Alamethicin channels - modelling via restrained molecular dynamics simulations.

Authors:  J Breed; P C Biggin; I D Kerr; O S Smart; M S Sansom
Journal:  Biochim Biophys Acta       Date:  1997-04-26

4.  Enhancement of protein crystal nucleation by critical density fluctuations.

Authors:  P R ten Wolde; D Frenkel
Journal:  Science       Date:  1997-09-26       Impact factor: 47.728

Review 5.  Structure and functions of channel-forming peptides: magainins, cecropins, melittin and alamethicin.

Authors:  B Bechinger
Journal:  J Membr Biol       Date:  1997-04-01       Impact factor: 1.843

6.  Simulation studies of alamethicin-bilayer interactions.

Authors:  P C Biggin; J Breed; H S Son; M S Sansom
Journal:  Biophys J       Date:  1997-02       Impact factor: 4.033

7.  On simulating lipid bilayers with an applied surface tension: periodic boundary conditions and undulations.

Authors:  S E Feller; R W Pastor
Journal:  Biophys J       Date:  1996-09       Impact factor: 4.033

8.  Structure of fully hydrated bilayer dispersions.

Authors:  J F Nagle; M C Wiener
Journal:  Biochim Biophys Acta       Date:  1988-07-07

Review 9.  Structure of lipid bilayers.

Authors:  J F Nagle; S Tristram-Nagle
Journal:  Biochim Biophys Acta       Date:  2000-11-10

10.  Mesoscopic undulations and thickness fluctuations in lipid bilayers from molecular dynamics simulations.

Authors:  E Lindahl; O Edholm
Journal:  Biophys J       Date:  2000-07       Impact factor: 4.033

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  79 in total

1.  Molecular dynamics simulation of spontaneous membrane fusion during a cubic-hexagonal phase transition.

Authors:  Siewert-Jan Marrink; D Peter Tieleman
Journal:  Biophys J       Date:  2002-11       Impact factor: 4.033

2.  Adhesion of nanoparticles to vesicles: a Brownian dynamics simulation.

Authors:  Hiroshi Noguchi; Masako Takasu
Journal:  Biophys J       Date:  2002-07       Impact factor: 4.033

3.  Dynamics of pinned membranes with application to protein diffusion on the surface of red blood cells.

Authors:  Lawrence C-L Lin; Frank L H Brown
Journal:  Biophys J       Date:  2004-02       Impact factor: 4.033

4.  Bridging microscopic and mesoscopic simulations of lipid bilayers.

Authors:  Gary Ayton; Gregory A Voth
Journal:  Biophys J       Date:  2002-12       Impact factor: 4.033

5.  Mesoscopic lateral diffusion in lipid bilayers.

Authors:  Gary S Ayton; Gregory A Voth
Journal:  Biophys J       Date:  2004-08-31       Impact factor: 4.033

6.  Metastable region of phase diagram: optimum parameter range for processing ultrahigh molecular weight polyethylene blends.

Authors:  Jing-Gang Gai; Yuan Zuo
Journal:  J Mol Model       Date:  2011-10-27       Impact factor: 1.810

7.  Cluster formation of anchored proteins induced by membrane-mediated interaction.

Authors:  Shuangyang Li; Xianren Zhang; Wenchuan Wang
Journal:  Biophys J       Date:  2010-06-02       Impact factor: 4.033

8.  An implicit solvent coarse-grained lipid model with correct stress profile.

Authors:  Alex J Sodt; Teresa Head-Gordon
Journal:  J Chem Phys       Date:  2010-05-28       Impact factor: 3.488

9.  Structural Behavior of the Peptaibol Harzianin HK VI in a DMPC Bilayer: Insights from MD Simulations.

Authors:  Marina Putzu; Sezgin Kara; Sergii Afonin; Stephan L Grage; Andrea Bordessa; Grégory Chaume; Thierry Brigaud; Anne S Ulrich; Tomáš Kubař
Journal:  Biophys J       Date:  2017-06-20       Impact factor: 4.033

10.  Field theoretic study of bilayer membrane fusion: II. Mechanism of a stalk-hole complex.

Authors:  K Katsov; M Müller; M Schick
Journal:  Biophys J       Date:  2005-11-04       Impact factor: 4.033

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