Literature DB >> 11462809

Nuclear magnetic resonance relaxation in determination of residue-specific 15N chemical shift tensors in proteins in solution: protein dynamics, structure, and applications of transverse relaxation optimized spectroscopy.

D Fushman1, D Cowburn.   

Abstract

We developed several approaches to direct determination of the 15N CSA from relaxation measurements in uniformly 15N-labeled proteins in solution. These methods are based on multiple-field measurements and could be extended to other nuclei in proteins and other molecules. Combined with the isotropic chemical shift measurements, this provides an experimental approach to full characterization of chemical shift tensors in proteins in their native milieu, which is likely to provide valuable information on the nature of chemical shifts and their relation to protein structure. Knowledge of 15N CSA is essential for an accurate characterization of protein dynamics from relaxation measurements.

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Year:  2001        PMID: 11462809     DOI: 10.1016/s0076-6879(01)39312-6

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  20 in total

1.  Determining protein dynamics from ¹⁵N relaxation data by using DYNAMICS.

Authors:  David Fushman
Journal:  Methods Mol Biol       Date:  2012

Review 2.  Chemical shift tensor - the heart of NMR: Insights into biological aspects of proteins.

Authors:  Hazime Saitô; Isao Ando; Ayyalusamy Ramamoorthy
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05-07       Impact factor: 9.795

3.  Variability of the 15N chemical shielding tensors in the B3 domain of protein G from 15N relaxation measurements at several fields. Implications for backbone order parameters.

Authors:  Jennifer B Hall; David Fushman
Journal:  J Am Chem Soc       Date:  2006-06-21       Impact factor: 15.419

4.  15N-{1H} NOE experiment at high magnetic field strengths.

Authors:  Qingguo Gong; Rieko Ishima
Journal:  J Biomol NMR       Date:  2007-01-16       Impact factor: 2.835

5.  Model-free analysis for large proteins at high magnetic field strengths.

Authors:  Shou-Lin Chang; Andrew P Hinck; Rieko Ishima
Journal:  J Biomol NMR       Date:  2007-06-26       Impact factor: 2.835

6.  Deriving quantitative dynamics information for proteins and RNAs using ROTDIF with a graphical user interface.

Authors:  Konstantin Berlin; Andrew Longhini; T Kwaku Dayie; David Fushman
Journal:  J Biomol NMR       Date:  2013-10-30       Impact factor: 2.835

7.  Improved accuracy in measuring one-bond and two-bond (15)N, (13)C (α) coupling constants in proteins by double-inphase/antiphase (DIPAP) spectroscopy.

Authors:  Frank Löhr; Sina Reckel; Susanne Stefer; Volker Dötsch; Jürgen M Schmidt
Journal:  J Biomol NMR       Date:  2011-06-07       Impact factor: 2.835

8.  A probe to monitor performance of ¹⁵N longitudinal relaxation experiments for proteins in solution.

Authors:  Rieko Ishima
Journal:  J Biomol NMR       Date:  2014-01-05       Impact factor: 2.835

9.  Influence of the O-phosphorylation of serine, threonine and tyrosine in proteins on the amidic ¹⁵N chemical shielding anisotropy tensors.

Authors:  Jiří Emmer; Andrea Vavrinská; Vladimír Sychrovský; Ladislav Benda; Zdeněk Kříž; Jaroslav Koča; Rolf Boelens; Vladimír Sklenář; Lukáš Trantírek
Journal:  J Biomol NMR       Date:  2012-12-01       Impact factor: 2.835

10.  How Does an Amide-N Chemical Shift Tensor Vary in Peptides?

Authors:  Alan Poon; Jeff Birn; A Ramamoorthy
Journal:  J Phys Chem B       Date:  2004-10-21       Impact factor: 2.991

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