Literature DB >> 24390467

A probe to monitor performance of ¹⁵N longitudinal relaxation experiments for proteins in solution.

Rieko Ishima1.   

Abstract

The magnitude of the ¹⁵N longitudinal relaxation rate typically decreases as magnetic field strength increases in globular proteins in solution. Thus, it is important to test the performance of ¹⁵N longitudinal relaxation experiments at high field strength. Herein, a tool to investigate systematic errors in ¹⁵N longitudinal relaxation rate, R₁, is introduced. The tool, a difference in R₁ values between the two components of the ¹H-coupled ¹⁵N magnetizations, R₁(1)-R₁(2), conveniently detects inefficiencies in cancellation of cross correlation between ¹H-¹⁵N dipolar coupling and ¹⁵N chemical shift anisotropy. Experiments, in varying conditions, and simulations of a two-spin system indicate that insufficient cancellation of the cross correlation is due to (1) ¹H pulse imperfection and (2) ¹H off-resonance effect, and (3) is further amplified by residual ¹⁵N transverse magnetization that is caused by the ¹⁵N off-resonance effect. Results also show that this problem can be easily and practically remedied by discarding the initial decay points when recording ¹⁵N longitudinal relaxation in proteins.

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Year:  2014        PMID: 24390467      PMCID: PMC3951101          DOI: 10.1007/s10858-013-9809-8

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  35 in total

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Authors:  M Andrec; G T Montelione; R M Levy
Journal:  J Magn Reson       Date:  1999-08       Impact factor: 2.229

2.  Assessing potential bias in the determination of rotational correlation times of proteins by NMR relaxation.

Authors:  A L Lee; A J Wand
Journal:  J Biomol NMR       Date:  1999-02       Impact factor: 2.835

Review 3.  Protein dynamics from NMR.

Authors:  R Ishima; D A Torchia
Journal:  Nat Struct Biol       Date:  2000-09

Review 4.  NMR studies of protein structure and dynamics.

Authors:  Lewis E Kay
Journal:  J Magn Reson       Date:  2005-04       Impact factor: 2.229

5.  Rotational diffusion anisotropy of proteins from simultaneous analysis of 15N and 13C alpha nuclear spin relaxation.

Authors:  L K Lee; M Rance; W J Chazin; A G Palmer
Journal:  J Biomol NMR       Date:  1997-04       Impact factor: 2.835

6.  Dynamics of methyl groups in proteins as studied by proton-detected 13C NMR spectroscopy. Application to the leucine residues of staphylococcal nuclease.

Authors:  L K Nicholson; L E Kay; D M Baldisseri; J Arango; P E Young; A Bax; D A Torchia
Journal:  Biochemistry       Date:  1992-06-16       Impact factor: 3.162

7.  Accurate sampling of high-frequency motions in proteins by steady-state (15)N-{(1)H} nuclear Overhauser effect measurements in the presence of cross-correlated relaxation.

Authors:  Fabien Ferrage; David Cowburn; Ranajeet Ghose
Journal:  J Am Chem Soc       Date:  2009-05-06       Impact factor: 15.419

8.  On the measurement of 15N-{1H} nuclear Overhauser effects.

Authors:  Fabien Ferrage; Andrea Piserchio; David Cowburn; Ranajeet Ghose
Journal:  J Magn Reson       Date:  2008-03-23       Impact factor: 2.229

9.  Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation.

Authors:  N A Farrow; R Muhandiram; A U Singer; S M Pascal; C M Kay; G Gish; S E Shoelson; T Pawson; J D Forman-Kay; L E Kay
Journal:  Biochemistry       Date:  1994-05-17       Impact factor: 3.162

10.  Practical aspects of the 2D 15N-[1h]-NOE experiment.

Authors:  Christian Renner; Michael Schleicher; Luis Moroder; Tad A Holak
Journal:  J Biomol NMR       Date:  2002-05       Impact factor: 2.835

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  2 in total

Review 1.  NMR of Macromolecular Assemblies and Machines at 1 GHz and Beyond: New Transformative Opportunities for Molecular Structural Biology.

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2.  An optimized method for (15)N R(1) relaxation rate measurements in non-deuterated proteins.

Authors:  Margarida Gairí; Andrey Dyachenko; M Teresa González; Miguel Feliz; Miquel Pons; Ernest Giralt
Journal:  J Biomol NMR       Date:  2015-05-07       Impact factor: 2.835

  2 in total

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