Literature DB >> 23202985

Influence of the O-phosphorylation of serine, threonine and tyrosine in proteins on the amidic ¹⁵N chemical shielding anisotropy tensors.

Jiří Emmer1, Andrea Vavrinská, Vladimír Sychrovský, Ladislav Benda, Zdeněk Kříž, Jaroslav Koča, Rolf Boelens, Vladimír Sklenář, Lukáš Trantírek.   

Abstract

Density functional theory was employed to study the influence of O-phosphorylation of serine, threonine, and tyrosine on the amidic (15)N chemical shielding anisotropy (CSA) tensor in the context of the complex chemical environments of protein structures. Our results indicate that the amidic (15)N CSA tensor has sensitive responses to the introduction of the phosphate group and the phosphorylation-promoted rearrangement of solvent molecules and hydrogen bonding networks in the vicinity of the phosphorylated site. Yet, the calculated (15)N CSA tensors in phosphorylated model peptides were in range of values experimentally observed for non-phosphorylated proteins. The extent of the phosphorylation induced changes suggests that the amidic (15)N CSA tensor in phosphorylated proteins could be reasonably well approximated with averaged CSA tensor values experimentally determined for non-phosphorylated amino acids in practical NMR applications, where chemical surrounding of the phosphorylated site is not known a priori in majority of cases. Our calculations provide estimates of relative errors to be associated with the averaged CSA tensor values in interpretations of NMR data from phosphorylated proteins.

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Year:  2012        PMID: 23202985     DOI: 10.1007/s10858-012-9686-6

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  56 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

Review 2.  The regulation of protein function by multisite phosphorylation--a 25 year update.

Authors:  P Cohen
Journal:  Trends Biochem Sci       Date:  2000-12       Impact factor: 13.807

Review 3.  Mapping protein-protein interactions in solution by NMR spectroscopy.

Authors:  Erik R P Zuiderweg
Journal:  Biochemistry       Date:  2002-01-08       Impact factor: 3.162

4.  Ab Initio Methods for the Calculation of NMR Shielding and Indirect Spinminus signSpin Coupling Constants.

Authors:  Trygve Helgaker; Michał Jaszuński; Kenneth Ruud
Journal:  Chem Rev       Date:  1999-01-13       Impact factor: 60.622

5.  Basis set exchange: a community database for computational sciences.

Authors:  Karen L Schuchardt; Brett T Didier; Todd Elsethagen; Lisong Sun; Vidhya Gurumoorthi; Jared Chase; Jun Li; Theresa L Windus
Journal:  J Chem Inf Model       Date:  2007-04-12       Impact factor: 4.956

6.  Recommendations for the presentation of NMR structures of proteins and nucleic acids. IUPAC-IUBMB-IUPAB Inter-Union Task Group on the Standardization of Data Bases of Protein and Nucleic Acid Structures Determined by NMR Spectroscopy.

Authors:  J L Markley; A Bax; Y Arata; C W Hilbers; R Kaptein; B D Sykes; P E Wright; K Wüthrich
Journal:  J Biomol NMR       Date:  1998-07       Impact factor: 2.835

7.  Determination of 15N chemical shift anisotropy from a membrane-bound protein by NMR spectroscopy.

Authors:  Manoj Kumar Pandey; Subramanian Vivekanandan; Shivani Ahuja; Kumar Pichumani; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Phys Chem B       Date:  2012-06-04       Impact factor: 2.991

8.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

9.  Limited variations in 15N CSA magnitudes and orientations in ubiquitin are revealed by joint analysis of longitudinal and transverse NMR relaxation.

Authors:  Peter Damberg; Jüri Jarvet; Astrid Gräslund
Journal:  J Am Chem Soc       Date:  2005-02-16       Impact factor: 15.419

10.  NMR analysis of a Tau phosphorylation pattern.

Authors:  Isabelle Landrieu; Ludovic Lacosse; Arnaud Leroy; Jean-Michel Wieruszeski; Xavier Trivelli; Alain Sillen; Nathalie Sibille; Harald Schwalbe; Krishna Saxena; Thomas Langer; Guy Lippens
Journal:  J Am Chem Soc       Date:  2006-03-22       Impact factor: 15.419

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  2 in total

1.  Cytochrome-P450-cytochrome-b5 interaction in a membrane environment changes 15N chemical shift anisotropy tensors.

Authors:  Manoj Kumar Pandey; Subramanian Vivekanandan; Shivani Ahuja; Rui Huang; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Phys Chem B       Date:  2013-10-28       Impact factor: 2.991

Review 2.  Phosphorylation of plant virus proteins: Analysis methods and biological functions.

Authors:  Xinjian Zhuang; Xiao Guo; Tianxiao Gu; Xiaowei Xu; Lang Qin; Kai Xu; Zhen He; Kun Zhang
Journal:  Front Microbiol       Date:  2022-07-26       Impact factor: 6.064

  2 in total

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