Literature DB >> 11425760

Congruent phylogenies of most common small-subunit rRNA and dissimilatory sulfite reductase gene sequences retrieved from estuarine sediments.

C Joulian1, N B Ramsing, K Ingvorsen.   

Abstract

The diversity of sulfate-reducing bacteria (SRB) in brackish sediment was investigated using small-subunit rRNA and dissimilatory sulfite reductase (DSR) gene clone libraries and cultivation. The phylogenetic affiliation of the most commonly retrieved clones for both genes was strikingly similar and produced Desulfosarcina variabilis-like sequences from the inoculum but Desulfomicrobium baculatum-like sequences from a high dilution in natural media. Related organisms were subsequently cultivated from the site. PCR bias appear to be limited (or very similar) for the two primersets and target genes. However, the DSR primers showed a much higher phylogenetic specificity. DSR gene analysis is thus a promising and specific approach for investigating SRB diversity in complex habitats.

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Year:  2001        PMID： 11425760      PMCID： PMC93019          DOI： 10.1128/AEM.67.7.3314-3318.2001

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  24 in total

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Journal:  Appl Environ Microbiol       Date:  1999-10       Impact factor: 4.792

2.  Diversity of sulfate-reducing bacteria in oxic and anoxic regions of a microbial mat characterized by comparative analysis of dissimilatory sulfite reductase genes.

Authors:  D Minz; J L Flax; S J Green; G Muyzer; Y Cohen; M Wagner; B E Rittmann; D A Stahl
Journal:  Appl Environ Microbiol       Date:  1999-10       Impact factor: 4.792

3.  Molecular and microscopic identification of sulfate-reducing bacteria in multispecies biofilms.

Authors:  R I Amann; J Stromley; R Devereux; R Key; D A Stahl
Journal:  Appl Environ Microbiol       Date:  1992-02       Impact factor: 4.792

4.  Seasonal changes in the relative abundance of uncultivated sulfate-reducing bacteria in a salt marsh sediment and in the rhizosphere of Spartina alterniflora.

Authors:  J N Rooney-Varga; R Devereux; R S Evans; M E Hines
Journal:  Appl Environ Microbiol       Date:  1997-10       Impact factor: 4.792

5.  Properties of Desulfovibrio carbinolicus sp. nov. and Other Sulfate-Reducing Bacteria Isolated from an Anaerobic-Purification Plant.

Authors:  H J Nanninga; J C Gottschal
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7.  Unexpected population distribution in a microbial mat community: sulfate-reducing bacteria localized to the highly oxic chemocline in contrast to a eukaryotic preference for anoxia.

Authors:  D Minz; S Fishbain; S J Green; G Muyzer; Y Cohen; B E Rittmann; D A Stahl
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8.  Biogeochemical and molecular signatures of anaerobic methane oxidation in a marine sediment.

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Journal:  Appl Environ Microbiol       Date:  2001-04       Impact factor: 4.792

9.  Genetic diversity in Sargasso Sea bacterioplankton.

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  18 in total

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2.  Linkage of high rates of sulfate reduction in Yellowstone hot springs to unique sequence types in the dissimilatory sulfate respiration pathway.

Authors:  Susan Fishbain; Jesse G Dillon; Heidi L Gough; David A Stahl
Journal:  Appl Environ Microbiol       Date:  2003-06       Impact factor: 4.792

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6.  Abundance, diversity and activity of sulfate-reducing prokaryotes in heavy metal-contaminated sediment from a salt marsh in the Medway Estuary (UK).

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7.  Flow cytometry-assisted cloning of specific sequence motifs from complex 16S rRNA gene libraries.

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8.  Lateral gene transfer of dissimilatory (bi)sulfite reductase revisited.

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9.  Community structure of bacteria associated with sheaths of freshwater and brackish thioploca species.

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10.  Response of the sulfate-reducing community to the re-establishment of estuarine conditions in two contrasting soils: a mesocosm approach.

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