Literature DB >> 11259314

Trehalose effect on low temperature protein dynamics: fluctuation and relaxation phenomena.

J Schlichter1, J Friedrich, L Herenyi, J Fidy.   

Abstract

We performed spectral diffusion experiments in trehalose-enriched glycerol/buffer-glass on horseradish peroxidase where the heme was replaced by metal-free mesoporphyrin IX, and compared them with the respective behavior in a pure glycerol/buffer-glass (Schlichter et al., J. Chem. Phys. 2000, 112:3045-3050). Trehalose has a significant influence: spectral diffusion broadening speeds up compared to the trehalose-free glass. This speeding up is attributed to a shortening of the correlation time of the frequency fluctuations most probably by preventing water molecules from leaving the protein interior. Superimposed to the frequency fluctuation dynamics is a relaxation dynamics that manifests itself as an aging process in the spectral diffusion broadening. Although the trehalose environment speeds up the fluctuations, it does not have any influence on the relaxation. Both relaxation and fluctuations are governed by power laws in time. The respective exponents do not seem to change with the protein environment. From the spectral dynamics, the mean square displacement in conformation space can be determined. It is governed by anomalous diffusion. The associated frequency correlation time is incredibly long, demonstrating that proteins at low temperatures are truly nonergodic systems.

Entities:  

Mesh:

Substances:

Year:  2001        PMID: 11259314      PMCID: PMC1301390          DOI: 10.1016/S0006-3495(01)76171-1

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  18 in total

1.  Cleavage of the haem-protein link by acid methylethylketone.

Authors:  F W TEALE
Journal:  Biochim Biophys Acta       Date:  1959-10

2.  Ligand binding to heme proteins: connection between dynamics and function.

Authors:  P J Steinbach; A Ansari; J Berendzen; D Braunstein; K Chu; B R Cowen; D Ehrenstein; H Frauenfelder; J B Johnson; D C Lamb
Journal:  Biochemistry       Date:  1991-04-23       Impact factor: 3.162

3.  The energy landscapes and motions of proteins.

Authors:  H Frauenfelder; S G Sligar; P G Wolynes
Journal:  Science       Date:  1991-12-13       Impact factor: 47.728

4.  Investigations of optical line shapes and kinetic hole burning in myoglobin.

Authors:  V Srajer; P M Champion
Journal:  Biochemistry       Date:  1991-07-30       Impact factor: 3.162

5.  Diffusion in a rough potential.

Authors:  R Zwanzig
Journal:  Proc Natl Acad Sci U S A       Date:  1988-04       Impact factor: 11.205

Review 6.  Conformational substates in proteins.

Authors:  H Frauenfelder; F Parak; R D Young
Journal:  Annu Rev Biophys Biophys Chem       Date:  1988

7.  Linkage of functional and structural heterogeneity in proteins: dynamic hole burning in carboxymyoglobin.

Authors:  B F Campbell; M R Chance; J M Friedman
Journal:  Science       Date:  1987-10-16       Impact factor: 47.728

8.  Reactive line-shape narrowing in low-temperature inhomogeneous geminate recombination of CO to myoglobin.

Authors:  N Agmon
Journal:  Biochemistry       Date:  1988-05-03       Impact factor: 3.162

9.  Temperature-dependent X-ray diffraction as a probe of protein structural dynamics.

Authors:  H Frauenfelder; G A Petsko; D Tsernoglou
Journal:  Nature       Date:  1979-08-16       Impact factor: 49.962

10.  Is vitrification sufficient to preserve liposomes during freeze-drying?

Authors:  J H Crowe; S B Leslie; L M Crowe
Journal:  Cryobiology       Date:  1994-08       Impact factor: 2.487

View more
  8 in total

1.  Molecular probes: what is the range of their interaction with the environment?

Authors:  H Lesch; J Schlichter; J Friedrich; J M Vanderkooi
Journal:  Biophys J       Date:  2004-01       Impact factor: 4.033

2.  Aging dynamics in globular proteins: summary and analysis of experimental results and simulation by a modified trap model.

Authors:  Levente Herenyi; Krisztian Szigeti; Judit Fidy; Tamas Temesvari; Jorg Schlichter; Josef Friedrich
Journal:  Eur Biophys J       Date:  2003-09-03       Impact factor: 1.733

3.  Fast dynamics and stabilization of proteins: binary glasses of trehalose and glycerol.

Authors:  Marcus T Cicerone; Christopher L Soles
Journal:  Biophys J       Date:  2004-06       Impact factor: 4.033

4.  GFP-mut2 proteins in trehalose-water matrixes: spatially heterogeneous protein-water-sugar structures.

Authors:  Laura D'Alfonso; Maddalena Collini; Fabio Cannone; Giuseppe Chirico; Barbara Campanini; Grazia Cottone; Lorenzo Cordone
Journal:  Biophys J       Date:  2007-04-06       Impact factor: 4.033

5.  Moving boundary problems governed by anomalous diffusion.

Authors:  Christopher J Vogl; Michael J Miksis; Stephen H Davis
Journal:  Proc Math Phys Eng Sci       Date:  2012-06-20       Impact factor: 2.704

6.  Role of solvent on protein-matrix coupling in MbCO embedded in water-saccharide systems: a Fourier transform infrared spectroscopy study.

Authors:  Sergio Giuffrida; Grazia Cottone; Lorenzo Cordone
Journal:  Biophys J       Date:  2006-05-19       Impact factor: 4.033

Review 7.  Stabilization of proteins in solid form.

Authors:  Marcus T Cicerone; Michael J Pikal; Ken K Qian
Journal:  Adv Drug Deliv Rev       Date:  2015-05-14       Impact factor: 15.470

8.  A molecular dynamics study of DMPC lipid bilayers interacting with dimethylsulfoxide-water mixtures.

Authors:  D Pinisetty; R Alapati; R V Devireddy
Journal:  J Membr Biol       Date:  2012-07-27       Impact factor: 1.843

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.