Literature DB >> 11248041

Crystal structure of the C-terminal domain of the RAP74 subunit of human transcription factor IIF.

K Kamada1, J De Angelis, R G Roeder, S K Burley.   

Abstract

The x-ray structure of a C-terminal fragment of the RAP74 subunit of human transcription factor (TF) IIF has been determined at 1.02-A resolution. The alpha/beta structure is strikingly similar to the globular domain of linker histone H5 and the DNA-binding domain of hepatocyte nuclear factor 3gamma (HNF-3gamma), making it a winged-helix protein. The surface electrostatic properties of this compact domain differ significantly from those of bona fide winged-helix transcription factors (HNF-3gamma and RFX1) and from the winged-helix domains found within the RAP30 subunit of TFIIF and the beta subunit of TFIIE. RAP74 has been shown to interact with the TFIIF-associated C-terminal domain phosphatase FCP1, and a putative phosphatase binding site has been identified within the RAP74 winged-helix domain.

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Year:  2001        PMID: 11248041      PMCID: PMC30616          DOI: 10.1073/pnas.051631098

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  43 in total

1.  Transcription initiated by RNA polymerase II and purified transcription factors from liver. Transcription factors alpha, beta gamma, and delta promote formation of intermediates in assembly of the functional preinitiation complex.

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Journal:  Proteins       Date:  1991

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Authors:  S Buratowski; M Sopta; J Greenblatt; P A Sharp
Journal:  Proc Natl Acad Sci U S A       Date:  1991-09-01       Impact factor: 11.205

Review 4.  General initiation factors for RNA polymerase II.

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Journal:  Annu Rev Biochem       Date:  1993       Impact factor: 23.643

5.  Structure of the central core domain of TFIIEbeta with a novel double-stranded DNA-binding surface.

Authors:  M Okuda; Y Watanabe; H Okamura; F Hanaoka; Y Ohkuma; Y Nishimura
Journal:  EMBO J       Date:  2000-03-15       Impact factor: 11.598

6.  A motif shared by TFIIF and TFIIB mediates their interaction with the RNA polymerase II carboxy-terminal domain phosphatase Fcp1p in Saccharomyces cerevisiae.

Authors:  M S Kobor; L D Simon; J Omichinski; G Zhong; J Archambault; J Greenblatt
Journal:  Mol Cell Biol       Date:  2000-10       Impact factor: 4.272

Review 7.  The structure and regulation of protein phosphatases.

Authors:  P Cohen
Journal:  Annu Rev Biochem       Date:  1989       Impact factor: 23.643

8.  Functions of the N- and C-terminal domains of human RAP74 in transcriptional initiation, elongation, and recycling of RNA polymerase II.

Authors:  L Lei; D Ren; A Finkelstein; Z F Burton
Journal:  Mol Cell Biol       Date:  1998-04       Impact factor: 4.272

9.  Reconstitution of the transcription factor TFIIH: assignment of functions for the three enzymatic subunits, XPB, XPD, and cdk7.

Authors:  F Tirode; D Busso; F Coin; J M Egly
Journal:  Mol Cell       Date:  1999-01       Impact factor: 17.970

10.  Structure of the human transcription factor TFIIF revealed by limited proteolysis with trypsin.

Authors:  C Yong; H Mitsuyasu; Z Chun; S Oshiro; N Hamasaki; S Kitajima
Journal:  FEBS Lett       Date:  1998-09-18       Impact factor: 4.124

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  17 in total

1.  Molecular mechanism of recruitment of TFIIF- associating RNA polymerase C-terminal domain phosphatase (FCP1) by transcription factor IIF.

Authors:  Katsuhiko Kamada; Robert G Roeder; Stephen K Burley
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-18       Impact factor: 11.205

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Journal:  EMBO J       Date:  2009-12-24       Impact factor: 11.598

Review 3.  Structural basis of transcription initiation by RNA polymerase II.

Authors:  Sarah Sainsbury; Carrie Bernecky; Patrick Cramer
Journal:  Nat Rev Mol Cell Biol       Date:  2015-02-18       Impact factor: 94.444

4.  The functions of TFIIF during initiation and transcript elongation are differentially affected by phosphorylation by casein kinase 2.

Authors:  Andrea Újvári; Mahadeb Pal; Donal S Luse
Journal:  J Biol Chem       Date:  2011-05-12       Impact factor: 5.157

5.  A novel plant-specific family gene, ROOT PRIMORDIUM DEFECTIVE 1, is required for the maintenance of active cell proliferation.

Authors:  Mineko Konishi; Munetaka Sugiyama
Journal:  Plant Physiol       Date:  2006-01-11       Impact factor: 8.340

6.  NMR structure of a complex containing the TFIIF subunit RAP74 and the RNA polymerase II carboxyl-terminal domain phosphatase FCP1.

Authors:  Bao D Nguyen; Karen L Abbott; Krzysztof Potempa; Michael S Kobor; Jacques Archambault; Jack Greenblatt; Pascale Legault; James G Omichinski
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-05       Impact factor: 11.205

7.  Optimization of the additive CHARMM all-atom protein force field targeting improved sampling of the backbone φ, ψ and side-chain χ(1) and χ(2) dihedral angles.

Authors:  Robert B Best; Xiao Zhu; Jihyun Shim; Pedro E M Lopes; Jeetain Mittal; Michael Feig; Alexander D Mackerell
Journal:  J Chem Theory Comput       Date:  2012-07-18       Impact factor: 6.006

Review 8.  RNA polymerase II transcription: structure and mechanism.

Authors:  Xin Liu; David A Bushnell; Roger D Kornberg
Journal:  Biochim Biophys Acta       Date:  2012-09-18

9.  Structural characterization of human general transcription factor TFIIF in solution.

Authors:  Satoko Akashi; Shinjiro Nagakura; Seiji Yamamoto; Masahiko Okuda; Yoshiaki Ohkuma; Yoshifumi Nishimura
Journal:  Protein Sci       Date:  2008-01-24       Impact factor: 6.725

10.  Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry.

Authors:  Zhuo Angel Chen; Anass Jawhari; Lutz Fischer; Claudia Buchen; Salman Tahir; Tomislav Kamenski; Morten Rasmussen; Laurent Lariviere; Jimi-Carlo Bukowski-Wills; Michael Nilges; Patrick Cramer; Juri Rappsilber
Journal:  EMBO J       Date:  2010-01-21       Impact factor: 11.598

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