Literature DB >> 23000482

RNA polymerase II transcription: structure and mechanism.

Xin Liu1, David A Bushnell, Roger D Kornberg.   

Abstract

A minimal RNA polymerase II (pol II) transcription system comprises the polymerase and five general transcription factors (GTFs) TFIIB, -D, -E, -F, and -H. The addition of Mediator enables a response to regulatory factors. The GTFs are required for promoter recognition and the initiation of transcription. Following initiation, pol II alone is capable of RNA transcript elongation and of proofreading. Structural studies reviewed here reveal roles of GTFs in the initiation process and shed light on the transcription elongation mechanism. This article is part of a Special Issue entitled: RNA Polymerase II Transcript Elongation.
Copyright © 2012 Elsevier B.V. All rights reserved.

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Year:  2012        PMID: 23000482      PMCID: PMC4244541          DOI: 10.1016/j.bbagrm.2012.09.003

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  88 in total

1.  The structural basis for the oriented assembly of a TBP/TFB/promoter complex.

Authors:  O Littlefield; Y Korkhin; P B Sigler
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-23       Impact factor: 11.205

2.  Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution.

Authors:  A L Gnatt; P Cramer; J Fu; D A Bushnell; R D Kornberg
Journal:  Science       Date:  2001-04-19       Impact factor: 47.728

3.  Position of the general transcription factor TFIIF within the RNA polymerase II transcription preinitiation complex.

Authors:  Jesse Eichner; Hung-Ta Chen; Linda Warfield; Steven Hahn
Journal:  EMBO J       Date:  2009-12-24       Impact factor: 11.598

4.  RNA polymerase II trigger loop residues stabilize and position the incoming nucleotide triphosphate in transcription.

Authors:  Xuhui Huang; Dong Wang; Dahlia R Weiss; David A Bushnell; Roger D Kornberg; Michael Levitt
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-23       Impact factor: 11.205

5.  Role of the RNA polymerase trigger loop in catalysis and pausing.

Authors:  Jinwei Zhang; Murali Palangat; Robert Landick
Journal:  Nat Struct Mol Biol       Date:  2009-12-06       Impact factor: 15.369

6.  Structure of an RNA polymerase II-TFIIB complex and the transcription initiation mechanism.

Authors:  Xin Liu; David A Bushnell; Dong Wang; Guillermo Calero; Roger D Kornberg
Journal:  Science       Date:  2009-11-12       Impact factor: 47.728

7.  Bridge helix and trigger loop perturbations generate superactive RNA polymerases.

Authors:  Lin Tan; Simone Wiesler; Dominika Trzaska; Hannah C Carney; Robert O J Weinzierl
Journal:  J Biol       Date:  2008-12-02

8.  Stepwise mechanism for transcription fidelity.

Authors:  Yulia Yuzenkova; Aleksandra Bochkareva; Vasisht R Tadigotla; Mohammad Roghanian; Savva Zorov; Konstantin Severinov; Nikolay Zenkin
Journal:  BMC Biol       Date:  2010-05-07       Impact factor: 7.431

9.  Molecular evolution of multisubunit RNA polymerases: structural analysis.

Authors:  William J Lane; Seth A Darst
Journal:  J Mol Biol       Date:  2009-11-03       Impact factor: 5.469

10.  Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry.

Authors:  Zhuo Angel Chen; Anass Jawhari; Lutz Fischer; Claudia Buchen; Salman Tahir; Tomislav Kamenski; Morten Rasmussen; Laurent Lariviere; Jimi-Carlo Bukowski-Wills; Michael Nilges; Patrick Cramer; Juri Rappsilber
Journal:  EMBO J       Date:  2010-01-21       Impact factor: 11.598

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  50 in total

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2.  Impact of template backbone heterogeneity on RNA polymerase II transcription.

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Journal:  Nucleic Acids Res       Date:  2015-02-06       Impact factor: 16.971

3.  Mechanisms of Evolutionary Innovation Point to Genetic Control Logic as the Key Difference Between Prokaryotes and Eukaryotes.

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Review 4.  Introduction to the Thematic Minireview Series: Chromatin and transcription.

Authors:  Joel M Gottesfeld; Michael F Carey
Journal:  J Biol Chem       Date:  2018-08-01       Impact factor: 5.157

Review 5.  Genome stability versus transcript diversity.

Authors:  Brian Magnuson; Karan Bedi; Mats Ljungman
Journal:  DNA Repair (Amst)       Date:  2016-05-16

Review 6.  R-loop generation during transcription: Formation, processing and cellular outcomes.

Authors:  Boris P Belotserkovskii; Silvia Tornaletti; Alicia D D'Souza; Philip C Hanawalt
Journal:  DNA Repair (Amst)       Date:  2018-08-25

7.  Understanding the Molecular Basis of RNA Polymerase II Transcription.

Authors:  Su Zhang; Dong Wang
Journal:  Isr J Chem       Date:  2013-06       Impact factor: 3.333

Review 8.  The dynamic duo: combining NMR and small angle scattering in structural biology.

Authors:  Janosch Hennig; Michael Sattler
Journal:  Protein Sci       Date:  2014-04-17       Impact factor: 6.725

Review 9.  Molecular basis of transcriptional fidelity and DNA lesion-induced transcriptional mutagenesis.

Authors:  Liang Xu; Linati Da; Steven W Plouffe; Jenny Chong; Eric Kool; Dong Wang
Journal:  DNA Repair (Amst)       Date:  2014-04-21

Review 10.  Causes and consequences of RNA polymerase II stalling during transcript elongation.

Authors:  Melvin Noe Gonzalez; Daniel Blears; Jesper Q Svejstrup
Journal:  Nat Rev Mol Cell Biol       Date:  2020-11-18       Impact factor: 94.444

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