Literature DB >> 11200527

Ansig for Windows: an interactive computer program for semiautomatic assignment of protein NMR spectra.

M Helgstrand1, P Kraulis, P Allard, T Härd.   

Abstract

Assignment of NMR spectra is a prerequisite for structure determination of proteins using NMR. The time spent on the assignment is comparatively long compared to that spent on other parts in the protein structure determination process, but it can be shortened by using either interactive or fully automated computer programs. To benefit from the advantages of both types of program we have developed a version of the interactive assignment program ANSIG to include automatized, yet user-supervised, routines. The new program includes tools for (i) semiautomatic sequential assignment, (ii) plotting of distances from PDB structure files directly in NMR spectra and (iii) statistical analysis of distance restraint violations with the possibility to directly zoom to violated NOEs in NOESY spectra.

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Year:  2000        PMID: 11200527     DOI: 10.1023/a:1026729404698

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  9 in total

1.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

2.  Automated NOESY interpretation with ambiguous distance restraints: the refined NMR solution structure of the pleckstrin homology domain from beta-spectrin.

Authors:  M Nilges; M J Macias; S I O'Donoghue; H Oschkinat
Journal:  J Mol Biol       Date:  1997-06-13       Impact factor: 5.469

3.  NMR View: A computer program for the visualization and analysis of NMR data.

Authors:  B A Johnson; R A Blevins
Journal:  J Biomol NMR       Date:  1994-09       Impact factor: 2.835

4.  AURELIA, a program for computer-aided analysis of multidimensional NMR spectra.

Authors:  K P Neidig; M Geyer; A Görler; C Antz; R Saffrich; W Beneicke; H R Kalbitzer
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

5.  The program XEASY for computer-supported NMR spectral analysis of biological macromolecules.

Authors:  C Bartels; T H Xia; M Billeter; P Güntert; K Wüthrich
Journal:  J Biomol NMR       Date:  1995-07       Impact factor: 2.835

6.  Automated and semiautomated analysis of homo- and heteronuclear multidimensional nuclear magnetic resonance spectra of proteins: the program Pronto.

Authors:  M Kjaer; K V Andersen; F M Poulsen
Journal:  Methods Enzymol       Date:  1994       Impact factor: 1.600

7.  Automated sequencing of amino acid spin systems in proteins using multidimensional HCC(CO)NH-TOCSY spectroscopy and constraint propagation methods from artificial intelligence.

Authors:  D Zimmerman; C Kulikowski; L Wang; B Lyons; G T Montelione
Journal:  J Biomol NMR       Date:  1994-03       Impact factor: 2.835

8.  Solution structure and dynamics of ras p21.GDP determined by heteronuclear three- and four-dimensional NMR spectroscopy.

Authors:  P J Kraulis; P J Domaille; S L Campbell-Burk; T Van Aken; E D Laue
Journal:  Biochemistry       Date:  1994-03-29       Impact factor: 3.162

9.  Protein three-dimensional structure determination and sequence-specific assignment of 13C and 15N-separated NOE data. A novel real-space ab initio approach.

Authors:  P J Kraulis
Journal:  J Mol Biol       Date:  1994-11-04       Impact factor: 5.469

  9 in total
  31 in total

1.  An NMR approach to structural proteomics.

Authors:  Adelinda Yee; Xiaoqing Chang; Antonio Pineda-Lucena; Bin Wu; Anthony Semesi; Brian Le; Theresa Ramelot; Gregory M Lee; Sudeepa Bhattacharyya; Pablo Gutierrez; Aleksej Denisov; Chang-Hun Lee; John R Cort; Guennadi Kozlov; Jack Liao; Grzegorz Finak; Limin Chen; David Wishart; Weontae Lee; Lawrence P McIntosh; Kalle Gehring; Michael A Kennedy; Aled M Edwards; Cheryl H Arrowsmith
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-19       Impact factor: 11.205

2.  An affibody in complex with a target protein: structure and coupled folding.

Authors:  Elisabet Wahlberg; Christofer Lendel; Magnus Helgstrand; Peter Allard; Vildan Dincbas-Renqvist; Anders Hedqvist; Helena Berglund; Per-Ake Nygren; Torleif Härd
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-19       Impact factor: 11.205

3.  Overlap between folding and functional energy landscapes for adenylate kinase conformational change.

Authors:  Ulrika Olsson; Magnus Wolf-Watz
Journal:  Nat Commun       Date:  2010-11-16       Impact factor: 14.919

4.  Solution structure of the N-terminal A domain of the human voltage-gated Ca2+channel beta4a subunit.

Authors:  Andrew C Vendel; Christopher D Rithner; Barbara A Lyons; William A Horne
Journal:  Protein Sci       Date:  2005-12-29       Impact factor: 6.725

5.  Solution structure and dynamics of the complex between cytochrome c and cytochrome c peroxidase determined by paramagnetic NMR.

Authors:  Alexander N Volkov; Jonathan A R Worrall; Elodie Holtzmann; Marcellus Ubbink
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-04       Impact factor: 11.205

6.  KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies.

Authors:  Naohiro Kobayashi; Junji Iwahara; Seizo Koshiba; Tadashi Tomizawa; Naoya Tochio; Peter Güntert; Takanori Kigawa; Shigeyuki Yokoyama
Journal:  J Biomol NMR       Date:  2007-07-18       Impact factor: 2.835

7.  Graphical interpretation of Boolean operators for protein NMR assignments.

Authors:  Dries Verdegem; Klaas Dijkstra; Xavier Hanoulle; Guy Lippens
Journal:  J Biomol NMR       Date:  2008-09-02       Impact factor: 2.835

8.  Solution structure of the human Grb7-SH2 domain/erbB2 peptide complex and structural basis for Grb7 binding to ErbB2.

Authors:  Monika Ivancic; Roger J Daly; Barbara A Lyons
Journal:  J Biomol NMR       Date:  2003-11       Impact factor: 2.835

9.  Mobility of TOAC spin-labelled peptides binding to the Src SH3 domain studied by paramagnetic NMR.

Authors:  Hanna E Lindfors; Peter E de Koning; Jan Wouter Drijfhout; Brigida Venezia; Marcellus Ubbink
Journal:  J Biomol NMR       Date:  2008-06-17       Impact factor: 2.835

10.  1H, 13C and 15N resonance assignment of Cu(I)-pseudoazurin from Alcaligenes faecalis S-6.

Authors:  Antonietta Impagliazzo; Marcellus Ubbink
Journal:  J Biomol NMR       Date:  2004-08       Impact factor: 2.835

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