Literature DB >> 11139289

Intron length and codon usage.

A E Vinogradov1.   

Abstract

The correlation was shown between the length of introns and the codon usage of the coding sequences of the corresponding genes, which in some cases can be related to the level of gene expression. The link is positive in the unicellular organisms, i.e., genes with the longer introns show the higher bias of codon usage. It is most pronounced in baker's yeast, where it is definitely related to the level of gene expression--genes with the higher level of expression have the longer introns. The correlation is inverted in multicellular organisms as compared to unicellular ones. Some organisms, however, do not show the link. The presence or absence of the link does not seem to be related to the GC percent of the coding sequences.

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Year:  2001        PMID: 11139289     DOI: 10.1007/s002390010128

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  27 in total

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Journal:  Genome Res       Date:  2006-02-03       Impact factor: 9.043

Review 3.  Three independent determinants of protein evolutionary rate.

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4.  Translational selection of genes coding for perfectly conserved proteins among three mosquito vectors.

Authors:  Olaf Rodriguez; Brajendra K Singh; David W Severson; Susanta K Behura
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5.  Molecular evolution of eukaryotic genomes: hemiascomycetous yeast spliceosomal introns.

Authors:  Elisabeth Bon; Serge Casaregola; Gaëlle Blandin; Bertrand Llorente; Cécile Neuvéglise; Martin Munsterkotter; Ulrich Guldener; Hans-Werner Mewes; Jacques Van Helden; Bernard Dujon; Claude Gaillardin
Journal:  Nucleic Acids Res       Date:  2003-02-15       Impact factor: 16.971

6.  Why eukaryotic cells use introns to enhance gene expression: splicing reduces transcription-associated mutagenesis by inhibiting topoisomerase I cutting activity.

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Journal:  Biol Direct       Date:  2011-05-18       Impact factor: 4.540

7.  The signature of selection mediated by expression on human genes.

Authors:  Araxi O Urrutia; Laurence D Hurst
Journal:  Genome Res       Date:  2003-09-15       Impact factor: 9.043

8.  Strong evidence for lineage and sequence specificity of substitution rates and patterns in Drosophila.

Authors:  Nadia D Singh; Peter F Arndt; Andrew G Clark; Charles F Aquadro
Journal:  Mol Biol Evol       Date:  2009-04-07       Impact factor: 16.240

9.  Eimeria maxima phosphatidylinositol 4-phosphate 5-kinase: locus sequencing, characterization, and cross-phylum comparison.

Authors:  Mei-Yen Goh; Mei-Zhen Pan; Damer P Blake; Kiew-Lian Wan; Beng-Kah Song
Journal:  Parasitol Res       Date:  2010-10-12       Impact factor: 2.289

10.  In plants, expression breadth and expression level distinctly and non-linearly correlate with gene structure.

Authors:  Hangxing Yang
Journal:  Biol Direct       Date:  2009-11-21       Impact factor: 4.540

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