Literature DB >> 11133272

Solution structure calculations through self-orientation in a magnetic field of a cerium(III) substituted calcium-binding protein.

I Bertini1, M B Janik, G Liu, C Luchinat, A Rosato.   

Abstract

Within the frame of a research aimed at characterizing paramagnetic metal ions capable of inducing self-orientation of metalloproteins in solution, we have studied the complex of the 75-amino-acid calcium-binding protein calbindin D(9k) with one Ce(III) ion (CaCeCb). Backbone (15)N-(1)H (1)J values have been determined for CaCeCb at two different magnetic fields. The above values showed a distinct dependence on the magnetic field, which is caused by the partial orientation of the molecule in solution. The difference in the values at the two magnetic fields provides structural constraints, which have been used to refine the structure of CaCeCb. The refined structure showed an improvement in terms of the number of residues falling in favored regions of the Ramachandran plot. The comparison of the molecular magnetic susceptibility tensor, obtained from the (15)N-(1)H (1)J values, with the magnetic susceptibility tensor of the metal, obtained from pseudocontact shifts, showed that the orientation of the molecule in solution is mainly determined by the Ce(III) ion. This paper shows that Ce(III), like low-spin Fe(III) in hemoproteins, is sufficiently magnetically anisotropic to induce self-orientation to an extent which can be exploited for solution structure determination. Copyright 2001 Academic Press.

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Year:  2001        PMID: 11133272     DOI: 10.1006/jmre.2000.2218

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  13 in total

1.  Paramagnetism-based versus classical constraints: an analysis of the solution structure of Ca Ln calbindin D9k.

Authors:  I Bertini; A Donaire; B Jiménez; C Luchinat; G Parigi; M Piccioli; L Poggi
Journal:  J Biomol NMR       Date:  2001-10       Impact factor: 2.835

2.  Structural basis for sequential displacement of Ca(2+) by Yb(3+) in a protozoan EF-hand calcium binding protein.

Authors:  Hanudatta S Atreya; Sulakshana Mukherjee; Kandala V R Chary; Yong-Min Lee; Claudio Luchinat
Journal:  Protein Sci       Date:  2003-03       Impact factor: 6.725

3.  Paramagnetism-based restraints for Xplor-NIH.

Authors:  Lucia Banci; Ivano Bertini; Gabriele Cavallaro; Andrea Giachetti; Claudio Luchinat; Giacomo Parigi
Journal:  J Biomol NMR       Date:  2004-03       Impact factor: 2.835

4.  Two-point anchoring of a lanthanide-binding peptide to a target protein enhances the paramagnetic anisotropic effect.

Authors:  Tomohide Saio; Kenji Ogura; Masashi Yokochi; Yoshihiro Kobashigawa; Fuyuhiko Inagaki
Journal:  J Biomol NMR       Date:  2009-05-26       Impact factor: 2.835

5.  Information content of long-range NMR data for the characterization of conformational heterogeneity.

Authors:  Witold Andrałojć; Konstantin Berlin; David Fushman; Claudio Luchinat; Giacomo Parigi; Enrico Ravera; Luca Sgheri
Journal:  J Biomol NMR       Date:  2015-06-05       Impact factor: 2.835

6.  A protocol for the refinement of NMR structures using simultaneously pseudocontact shift restraints from multiple lanthanide ions.

Authors:  Davide Sala; Andrea Giachetti; Claudio Luchinat; Antonio Rosato
Journal:  J Biomol NMR       Date:  2016-10-22       Impact factor: 2.835

7.  Calmodulin tagging provides a general method of using lanthanide induced magnetic field orientation to observe residual dipolar couplings in proteins in solution.

Authors:  J Feeny; B Birdsall; A F Bradbury; R R Biekofsky; P M Bayley
Journal:  J Biomol NMR       Date:  2001-09       Impact factor: 2.835

8.  Convenient method for resolving degeneracies due to symmetry of the magnetic susceptibility tensor and its application to pseudo contact shift-based protein-protein complex structure determination.

Authors:  Yoshihiro Kobashigawa; Tomohide Saio; Masahiro Ushio; Mitsuhiro Sekiguchi; Masashi Yokochi; Kenji Ogura; Fuyuhiko Inagaki
Journal:  J Biomol NMR       Date:  2012-04-10       Impact factor: 2.835

9.  15N-1H Residual dipolar coupling analysis of native and alkaline-K79A Saccharomyces cerevisiae cytochrome c.

Authors:  Michael Assfalg; Ivano Bertini; Paola Turano; A Grant Mauk; Jay R Winkler; Harry B Gray
Journal:  Biophys J       Date:  2003-06       Impact factor: 4.033

10.  Modulating RNA Alignment Using Directional Dynamic Kinks: Application in Determining an Atomic-Resolution Ensemble for a Hairpin using NMR Residual Dipolar Couplings.

Authors:  Loïc Salmon; George M Giambaşu; Evgenia N Nikolova; Katja Petzold; Akash Bhattacharya; David A Case; Hashim M Al-Hashimi
Journal:  J Am Chem Soc       Date:  2015-09-29       Impact factor: 15.419

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