Literature DB >> 11121056

A large upstream region is not necessary for gene expression or hypersensitive site formation at the mouse beta -globin locus.

C M Farrell1, A Grinberg, S P Huang, D Chen, J G Pichel, H Westphal, G Felsenfeld.   

Abstract

Developmental expression at the beta-globin locus is regulated in part by the locus control region, a region upstream of the genes containing at least five major DNase I hypersensitive sites (HSs) in mammalian erythrocytes. Sequences farther 5' of these HSs are conserved in mouse and human, and both loci are embedded within a cluster of functional odorant receptor genes. In humans, distant upstream sequences have been implicated in regulation of the beta-globin genes. In this study, the role of the 5'-most HSs and their adjacent sequence was investigated by deletion of an 11-kb region from the mouse locus, including 5'HS 4.2, 5'HS 5, 5'HS 6, and the 5'beta1 odorant receptor gene. Mice that were homozygous for this deletion were fully viable, and no significant effect on adult beta-globin gene expression was seen. 5'HSs 1-4, which are located downstream of the deletion, were still present in the mutant mice. In addition, two new upstream HSs, HS -60.7 and HS -62.5, were found in erythroid tissue of both wild-type and mutant mice. Therefore, although the possibility of a minor role still exists, neither the HSs nor the other regions deleted in this study are essential for beta-globin gene expression, and it is unlikely that chromatin structure is affected either upstream or downstream of the deletion. This is the largest deletion at the mouse locus control region to show no apparent phenotype, and focuses attention on the possible contribution of sequences even farther upstream.

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Year:  2000        PMID: 11121056      PMCID: PMC18957          DOI: 10.1073/pnas.97.26.14554

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  45 in total

1.  Positional enhancer-blocking activity of the chicken beta-globin insulator in transiently transfected cells.

Authors:  F Recillas-Targa; A C Bell; G Felsenfeld
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-07       Impact factor: 11.205

2.  Nuclear localization and histone acetylation: a pathway for chromatin opening and transcriptional activation of the human beta-globin locus.

Authors:  D Schübeler; C Francastel; D M Cimbora; A Reik; D I Martin; M Groudine
Journal:  Genes Dev       Date:  2000-04-15       Impact factor: 11.361

3.  A deletion of the human beta-globin locus activation region causes a major alteration in chromatin structure and replication across the entire beta-globin locus.

Authors:  W C Forrester; E Epner; M C Driscoll; T Enver; M Brice; T Papayannopoulou; M Groudine
Journal:  Genes Dev       Date:  1990-10       Impact factor: 11.361

Review 4.  Control of globin gene transcription.

Authors:  T Evans; G Felsenfeld; M Reitman
Journal:  Annu Rev Cell Biol       Date:  1990

5.  The "beta-like-globin" gene domain in human erythroid cells.

Authors:  D Tuan; W Solomon; Q Li; I M London
Journal:  Proc Natl Acad Sci U S A       Date:  1985-10       Impact factor: 11.205

6.  Conservation of the primary structure, organization, and function of the human and mouse beta-globin locus-activating regions.

Authors:  A M Moon; T J Ley
Journal:  Proc Natl Acad Sci U S A       Date:  1990-10       Impact factor: 11.205

7.  Chicken beta-globin 5'HS4 insulators function to reduce variability in transgenic founder mice.

Authors:  W Potts; D Tucker; H Wood; C Martin
Journal:  Biochem Biophys Res Commun       Date:  2000-07-14       Impact factor: 3.575

8.  Beta-globin gene switching and DNase I sensitivity of the endogenous beta-globin locus in mice do not require the locus control region.

Authors:  M A Bender; M Bulger; J Close; M Groudine
Journal:  Mol Cell       Date:  2000-02       Impact factor: 17.970

9.  Developmental regulation of topoisomerase II sites and DNase I-hypersensitive sites in the chicken beta-globin locus.

Authors:  M Reitman; G Felsenfeld
Journal:  Mol Cell Biol       Date:  1990-06       Impact factor: 4.272

10.  Definition of the minimal requirements within the human beta-globin gene and the dominant control region for high level expression.

Authors:  P Collis; M Antoniou; F Grosveld
Journal:  EMBO J       Date:  1990-01       Impact factor: 11.598

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  19 in total

1.  A complex chromatin landscape revealed by patterns of nuclease sensitivity and histone modification within the mouse beta-globin locus.

Authors:  Michael Bulger; Dirk Schübeler; M A Bender; Joan Hamilton; Catherine M Farrell; Ross C Hardison; Mark Groudine
Journal:  Mol Cell Biol       Date:  2003-08       Impact factor: 4.272

2.  Synergistic and additive properties of the beta-globin locus control region (LCR) revealed by 5'HS3 deletion mutations: implication for LCR chromatin architecture.

Authors:  Xiangdong Fang; Jin Sun; Ping Xiang; Man Yu; Patrick A Navas; Kenneth R Peterson; George Stamatoyannopoulos; Qiliang Li
Journal:  Mol Cell Biol       Date:  2005-08       Impact factor: 4.272

3.  CTCF-dependent enhancer-blocking by alternative chromatin loop formation.

Authors:  Chunhui Hou; Hui Zhao; Keiji Tanimoto; Ann Dean
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-12       Impact factor: 11.205

4.  Cell type specificity of chromatin organization mediated by CTCF and cohesin.

Authors:  Chunhui Hou; Ryan Dale; Ann Dean
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-02       Impact factor: 11.205

Review 5.  In the loop: long range chromatin interactions and gene regulation.

Authors:  Ann Dean
Journal:  Brief Funct Genomics       Date:  2011-01-22       Impact factor: 4.241

Review 6.  Chromatin insulators: a role in nuclear organization and gene expression.

Authors:  Jingping Yang; Victor G Corces
Journal:  Adv Cancer Res       Date:  2011       Impact factor: 6.242

7.  Conserved CTCF insulator elements flank the mouse and human beta-globin loci.

Authors:  Catherine M Farrell; Adam G West; Gary Felsenfeld
Journal:  Mol Cell Biol       Date:  2002-06       Impact factor: 4.272

Review 8.  Epigenetics of beta-globin gene regulation.

Authors:  Christine M Kiefer; Chunhui Hou; Jane A Little; Ann Dean
Journal:  Mutat Res       Date:  2008-08-07       Impact factor: 2.433

9.  A test of insulator interactions in Drosophila.

Authors:  Emily J Kuhn; Michaela M Viering; Katherine M Rhodes; Pamela K Geyer
Journal:  EMBO J       Date:  2003-05-15       Impact factor: 11.598

10.  A 220-nucleotide deletion of the intronic enhancer reveals an epigenetic hierarchy in immunoglobulin heavy chain locus activation.

Authors:  Tirtha Chakraborty; Thomas Perlot; Ramesh Subrahmanyam; Anant Jani; Peter H Goff; Yu Zhang; Irina Ivanova; Frederick W Alt; Ranjan Sen
Journal:  J Exp Med       Date:  2009-05-04       Impact factor: 14.307

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