Literature DB >> 21704228

Chromatin insulators: a role in nuclear organization and gene expression.

Jingping Yang1, Victor G Corces.   

Abstract

Chromatin insulators are DNA-protein complexes with broad functions in nuclear biology. Based on the ability of insulator proteins to interact with each other, it was originally found that insulators form loops that bring together distant regions of the genome. Data from genome-wide localization studies indicate that insulator proteins can be present in intergenic regions as well as at the 5', introns or 3' of genes, suggesting a variety of roles for insulator loops in chromosome biology. Recent results suggest that insulators mediate intra- and interchromosomal interactions to affect transcription, imprinting, and recombination. Cells have developed mechanisms to control insulator activity by recruiting specialized proteins or by covalent modification of core components. It is then possible that insulator-mediated interactions set up cell-specific blueprints of nuclear organization that may contribute to the establishment of different patterns of gene expression during cell differentiation and development. As a consequence, disruption of insulator activity could result in the development of cancer or other disease states.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21704228      PMCID: PMC3175007          DOI: 10.1016/B978-0-12-386469-7.00003-7

Source DB:  PubMed          Journal:  Adv Cancer Res        ISSN: 0065-230X            Impact factor:   6.242


  125 in total

1.  Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions.

Authors:  Lars Guelen; Ludo Pagie; Emilie Brasset; Wouter Meuleman; Marius B Faza; Wendy Talhout; Bert H Eussen; Annelies de Klein; Lodewyk Wessels; Wouter de Laat; Bas van Steensel
Journal:  Nature       Date:  2008-05-07       Impact factor: 49.962

Review 2.  Chromatin insulators: regulatory mechanisms and epigenetic inheritance.

Authors:  Ashley M Bushey; Elizabeth R Dorman; Victor G Corces
Journal:  Mol Cell       Date:  2008-10-10       Impact factor: 17.970

3.  CTCF regulates cell cycle progression of alphabeta T cells in the thymus.

Authors:  Helen Heath; Claudia Ribeiro de Almeida; Frank Sleutels; Gemma Dingjan; Suzanne van de Nobelen; Iris Jonkers; Kam-Wing Ling; Joost Gribnau; Rainer Renkawitz; Frank Grosveld; Rudi W Hendriks; Niels Galjart
Journal:  EMBO J       Date:  2008-10-16       Impact factor: 11.598

4.  CTCFL/BORIS is a methylation-independent DNA-binding protein that preferentially binds to the paternal H19 differentially methylated region.

Authors:  Phuongmai Nguyen; Hengmi Cui; Kheem S Bisht; Lunching Sun; Krish Patel; Richard S Lee; Hiroyuki Kugoh; Mitsuo Oshimura; Andrew P Feinberg; David Gius
Journal:  Cancer Res       Date:  2008-07-15       Impact factor: 12.701

5.  CTCF physically links cohesin to chromatin.

Authors:  Eric D Rubio; David J Reiss; Piri L Welcsh; Christine M Disteche; Galina N Filippova; Nitin S Baliga; Ruedi Aebersold; Jeffrey A Ranish; Anton Krumm
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-11       Impact factor: 11.205

6.  Integration of external signaling pathways with the core transcriptional network in embryonic stem cells.

Authors:  Xi Chen; Han Xu; Ping Yuan; Fang Fang; Mikael Huss; Vinsensius B Vega; Eleanor Wong; Yuriy L Orlov; Weiwei Zhang; Jianming Jiang; Yuin-Han Loh; Hock Chuan Yeo; Zhen Xuan Yeo; Vipin Narang; Kunde Ramamoorthy Govindarajan; Bernard Leong; Atif Shahab; Yijun Ruan; Guillaume Bourque; Wing-Kin Sung; Neil D Clarke; Chia-Lin Wei; Huck-Hui Ng
Journal:  Cell       Date:  2008-06-13       Impact factor: 41.582

7.  The insulator factor CTCF controls MHC class II gene expression and is required for the formation of long-distance chromatin interactions.

Authors:  Parimal Majumder; Jorge A Gomez; Brian P Chadwick; Jeremy M Boss
Journal:  J Exp Med       Date:  2008-03-17       Impact factor: 14.307

8.  CCCTC-binding factor activates PARP-1 affecting DNA methylation machinery.

Authors:  Tiziana Guastafierro; Barbara Cecchinelli; Michele Zampieri; Anna Reale; Giuseppe Riggio; Olga Sthandier; Gabriella Zupi; Lilia Calabrese; Paola Caiafa
Journal:  J Biol Chem       Date:  2008-06-05       Impact factor: 5.157

9.  Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data.

Authors:  Raja Jothi; Suresh Cuddapah; Artem Barski; Kairong Cui; Keji Zhao
Journal:  Nucleic Acids Res       Date:  2008-08-06       Impact factor: 16.971

10.  CTCF genomic binding sites in Drosophila and the organisation of the bithorax complex.

Authors:  Eimear E Holohan; Camilla Kwong; Boris Adryan; Marek Bartkuhn; Martin Herold; Rainer Renkawitz; Steven Russell; Robert White
Journal:  PLoS Genet       Date:  2007-07       Impact factor: 5.917

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  31 in total

1.  Analysis of insulator proteins binding in reporter genetic constructs transfected into Drosophila S2 cells.

Authors:  D M Fedoseeva; N A Tchurikov
Journal:  Dokl Biochem Biophys       Date:  2013-08-23       Impact factor: 0.788

2.  The zinc-finger protein CLAMP promotes gypsy chromatin insulator function in Drosophila.

Authors:  Indira Bag; Ryan K Dale; Cameron Palmer; Elissa P Lei
Journal:  J Cell Sci       Date:  2019-03-08       Impact factor: 5.285

Review 3.  From remote enhancers to gene regulation: charting the genome's regulatory landscapes.

Authors:  Orsolya Symmons; François Spitz
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-05-06       Impact factor: 6.237

4.  Ordered patterning of the sensory system is susceptible to stochastic features of gene expression.

Authors:  Ritika Giri; Dimitrios K Papadopoulos; Diana M Posadas; Hemanth K Potluri; Pavel Tomancak; Madhav Mani; Richard W Carthew
Journal:  Elife       Date:  2020-02-26       Impact factor: 8.140

5.  An Organizational Hub of Developmentally Regulated Chromatin Loops in the Drosophila Antennapedia Complex.

Authors:  Mo Li; Zhibo Ma; Jiayang K Liu; Sharmila Roy; Sapna K Patel; Derrick C Lane; Haini N Cai
Journal:  Mol Cell Biol       Date:  2015-09-21       Impact factor: 4.272

6.  CAST-ChIP maps cell-type-specific chromatin states in the Drosophila central nervous system.

Authors:  Tamás Schauer; Petra C Schwalie; Ava Handley; Carla E Margulies; Paul Flicek; Andreas G Ladurner
Journal:  Cell Rep       Date:  2013-10-03       Impact factor: 9.423

7.  Drosophila GAGA factor is required for full activation of the dE2f1-Yki/Sd transcriptional program.

Authors:  Battuya Bayarmagnai; Brandon N Nicolay; Abul B M M K Islam; Nuria Lopez-Bigas; Maxim V Frolov
Journal:  Cell Cycle       Date:  2012-10-15       Impact factor: 4.534

Review 8.  RDoC and translational perspectives on the genetics of trauma-related psychiatric disorders.

Authors:  Janitza L Montalvo-Ortiz; Joel Gelernter; James Hudziak; Joan Kaufman
Journal:  Am J Med Genet B Neuropsychiatr Genet       Date:  2015-11-22       Impact factor: 3.568

9.  Child abuse and epigenetic mechanisms of disease risk.

Authors:  Bao-Zhu Yang; Huiping Zhang; Wenjing Ge; Natalie Weder; Heather Douglas-Palumberi; Francheska Perepletchikova; Joel Gelernter; Joan Kaufman
Journal:  Am J Prev Med       Date:  2013-02       Impact factor: 5.043

Review 10.  The Research Domain Criteria (RDoC) Project and Studies of Risk and Resilience in Maltreated Children.

Authors:  Joan Kaufman; Joel Gelernter; James J Hudziak; Audrey R Tyrka; Jeremy D Coplan
Journal:  J Am Acad Child Adolesc Psychiatry       Date:  2015-06-10       Impact factor: 8.829

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