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Literature DB >> 12875108

HIV sequence databases.

Carla Kuiken¹, Bette Korber, Robert W Shafer.

Abstract

Two important databases are often used in HIV genetic research, the HIV Sequence Database in Los Alamos, which collects all sequences and focuses on annotation and data analysis, and the HIV RT/Protease Sequence Database in Stanford, which collects sequences associated with the development of viral resistance against anti-retroviral drugs and focuses on analysis of those sequences. The types of data and services these two databases offer, the tools they provide, and the way they are set up and operated are described in detail.

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Year: 2003 PMID： 12875108 PMCID： PMC2613779

Source DB: PubMed Journal: AIDS Rev ISSN： 1139-6121 Impact factor: 2.500

31 in total

Review 1. Origins and evolution of AIDS viruses.

Authors: P M Sharp; E Bailes; D L Robertson; F Gao; B H Hahn
Journal: Biol Bull Date: 1999-06 Impact factor: 1.818

2. Potent suppression of HIV-1 replication in humans by T-20, a peptide inhibitor of gp41-mediated virus entry.

Authors: J M Kilby; S Hopkins; T M Venetta; B DiMassimo; G A Cloud; J Y Lee; L Alldredge; E Hunter; D Lambert; D Bolognesi; T Matthews; M R Johnson; M A Nowak; G M Shaw; M S Saag
Journal: Nat Med Date: 1998-11 Impact factor: 53.440

3. Models of amino acid substitution and applications to mitochondrial protein evolution.

Authors: Z Yang; R Nielsen; M Hasegawa
Journal: Mol Biol Evol Date: 1998-12 Impact factor: 16.240

4. Fourth annual survey of worldwide HIV, SIV, and SHIV challenge studies in vaccinated nonhuman primates.

Authors: J T Warren; M A Levinson
Journal: J Med Primatol Date: 1995-05 Impact factor: 0.667

5. Tracking changes in HIV-1 envelope quasispecies using DNA heteroduplex analysis.

Authors: E L Delwart; C J Gordon
Journal: Methods Date: 1997-08 Impact factor: 3.608

Review 6. AIDS as a zoonosis: scientific and public health implications.

Authors: B H Hahn; G M Shaw; K M De Cock; P M Sharp
Journal: Science Date: 2000-01-28 Impact factor: 47.728

7. Full-length sequence and mosaic structure of a human immunodeficiency virus type 1 isolate from Thailand.

Authors: J K Carr; M O Salminen; C Koch; D Gotte; A W Artenstein; P A Hegerich; D St Louis; D S Burke; F E McCutchan
Journal: J Virol Date: 1996-09 Impact factor: 5.103

8. Antiretroviral-drug resistance among patients recently infected with HIV.

Authors: Susan J Little; Sarah Holte; Jean-Pierre Routy; Eric S Daar; Marty Markowitz; Ann C Collier; Richard A Koup; John W Mellors; Elizabeth Connick; Brian Conway; Michael Kilby; Lei Wang; Jeannette M Whitcomb; Nicholas S Hellmann; Douglas D Richman
Journal: N Engl J Med Date: 2002-08-08 Impact factor: 91.245

9. Human immunodeficiency virus type 2 (HIV-2) seroprevalence and characterization of a distinct HIV-2 genetic subtype from the natural range of simian immunodeficiency virus-infected sooty mangabeys.

Authors: Z Chen; A Luckay; D L Sodora; P Telfer; P Reed; A Gettie; J M Kanu; R F Sadek; J Yee; D D Ho; L Zhang; P A Marx
Journal: J Virol Date: 1997-05 Impact factor: 5.103

10. The heterosexual human immunodeficiency virus type 1 epidemic in Thailand is caused by an intersubtype (A/E) recombinant of African origin.

Authors: F Gao; D L Robertson; S G Morrison; H Hui; S Craig; J Decker; P N Fultz; M Girard; G M Shaw; B H Hahn; P M Sharp
Journal: J Virol Date: 1996-10 Impact factor: 5.103

81 in total

1. Chronology and evolution of the HIV-1 subtype C epidemic in Ethiopia.

Authors: Damien C Tully; Charles Wood
Journal: AIDS Date: 2010-06-19 Impact factor: 4.177

2. Recommendations for the design and use of standard virus panels to assess neutralizing antibody responses elicited by candidate human immunodeficiency virus type 1 vaccines.

Authors: John R Mascola; Patricia D'Souza; Peter Gilbert; Beatrice H Hahn; Nancy L Haigwood; Lynn Morris; Christos J Petropoulos; Victoria R Polonis; Marcella Sarzotti; David C Montefiori
Journal: J Virol Date: 2005-08 Impact factor: 5.103

3. Infectivity and neutralization of simian immunodeficiency virus with FLAG epitope insertion in gp120 variable loops.

Authors: Melissa E Laird; Ronald C Desrosiers
Journal: J Virol Date: 2007-08-08 Impact factor: 5.103

4. Phylogenetic analysis of population-based and deep sequencing data to identify coevolving sites in the nef gene of HIV-1.

Authors: Art F Y Poon; Luke C Swenson; Winnie W Y Dong; Wenjie Deng; Sergei L Kosakovsky Pond; Zabrina L Brumme; James I Mullins; Douglas D Richman; P Richard Harrigan; Simon D W Frost
Journal: Mol Biol Evol Date: 2009-12-02 Impact factor: 16.240

5. Genetic and neutralization sensitivity of diverse HIV-1 env clones from chronically infected patients in China.

Authors: Hong Shang; Xiaoxu Han; Xuanling Shi; Teng Zuo; Mark Goldin; Dan Chen; Bing Han; Wei Sun; Hao Wu; Xinquan Wang; Linqi Zhang
Journal: J Biol Chem Date: 2011-02-16 Impact factor: 5.157

6. Human immunodeficiency virus type 1 subtype B ancestral envelope protein is functional and elicits neutralizing antibodies in rabbits similar to those elicited by a circulating subtype B envelope.

Authors: N A Doria-Rose; G H Learn; A G Rodrigo; D C Nickle; F Li; M Mahalanabis; M T Hensel; S McLaughlin; P F Edmonson; D Montefiori; S W Barnett; N L Haigwood; J I Mullins
Journal: J Virol Date: 2005-09 Impact factor: 5.103