Literature DB >> 11058110

Error-free and error-prone lesion bypass by human DNA polymerase kappa in vitro.

Y Zhang1, F Yuan, X Wu, M Wang, O Rechkoblit, J S Taylor, N E Geacintov, Z Wang.   

Abstract

Error-free lesion bypass and error-prone lesion bypass are important cellular responses to DNA damage during replication, both of which require a DNA polymerase (Pol). To identify lesion bypass DNA polymerases, we have purified human Polkappa encoded by the DINB1 gene and examined its response to damaged DNA templates. Here, we show that human Polkappa is a novel lesion bypass polymerase in vitro. Purified human Polkappa efficiently bypassed a template 8-oxoguanine, incorporating mainly A and less frequently C opposite the lesion. Human Polkappa most frequently incorporated A opposite a template abasic site. Efficient further extension required T as the next template base, and was mediated mainly by a one-nucleotide deletion mechanism. Human Polkappa was able to bypass an acetylaminofluorene-modified G in DNA, incorporating either C or T, and less efficiently A opposite the lesion. Furthermore, human Polkappa effectively bypassed a template (-)-trans-anti-benzo[a]pyrene-N:(2)-dG lesion in an error-free manner by incorporating a C opposite the bulky adduct. In contrast, human Polkappa was unable to bypass a template TT dimer or a TT (6-4) photoproduct, two of the major UV lesions. These results suggest that Polkappa plays an important role in both error-free and error-prone lesion bypass in humans.

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Year:  2000        PMID: 11058110      PMCID: PMC113145          DOI: 10.1093/nar/28.21.4138

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  53 in total

1.  Mutagenic specificity of (acetylamino)fluorene-derived DNA adducts in mammalian cells.

Authors:  S Shibutani; N Suzuki; A P Grollman
Journal:  Biochemistry       Date:  1998-09-01       Impact factor: 3.162

2.  Mutation enhancement by DINB1, a mammalian homologue of the Escherichia coli mutagenesis protein dinB.

Authors:  T Ogi; T Kato; T Kato; H Ohmori
Journal:  Genes Cells       Date:  1999-11       Impact factor: 1.891

3.  The human REV1 gene codes for a DNA template-dependent dCMP transferase.

Authors:  W Lin; H Xin; Y Zhang; X Wu; F Yuan; Z Wang
Journal:  Nucleic Acids Res       Date:  1999-11-15       Impact factor: 16.971

4.  REV3, a Saccharomyces cerevisiae gene whose function is required for induced mutagenesis, is predicted to encode a nonessential DNA polymerase.

Authors:  A Morrison; R B Christensen; J Alley; A K Beck; E G Bernstine; J F Lemontt; C W Lawrence
Journal:  J Bacteriol       Date:  1989-10       Impact factor: 3.490

5.  UmuD'(2)C is an error-prone DNA polymerase, Escherichia coli pol V.

Authors:  M Tang; X Shen; E G Frank; M O'Donnell; R Woodgate; M F Goodman
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-03       Impact factor: 11.205

6.  DNA ligation during excision repair in yeast cell-free extracts is specifically catalyzed by the CDC9 gene product.

Authors:  X Wu; E Braithwaite; Z Wang
Journal:  Biochemistry       Date:  1999-03-02       Impact factor: 3.162

7.  The Saccharomyces cerevisiae RAD30 gene, a homologue of Escherichia coli dinB and umuC, is DNA damage inducible and functions in a novel error-free postreplication repair mechanism.

Authors:  J P McDonald; A S Levine; R Woodgate
Journal:  Genetics       Date:  1997-12       Impact factor: 4.562

8.  Human and mouse homologs of Escherichia coli DinB (DNA polymerase IV), members of the UmuC/DinB superfamily.

Authors:  V L Gerlach; L Aravind; G Gotway; R A Schultz; E V Koonin; E C Friedberg
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-12       Impact factor: 11.205

9.  Mechanism of mutation on DNA templates containing synthetic abasic sites: study with a double strand vector.

Authors:  M Takeshita; W Eisenberg
Journal:  Nucleic Acids Res       Date:  1994-05-25       Impact factor: 16.971

10.  N-2-aminofluorene and N-2 acetylaminofluorene adducts: the local sequence context of an adduct and its chemical structure determine its replication properties.

Authors:  P Belguise-Valladier; R P Fuchs
Journal:  J Mol Biol       Date:  1995-06-23       Impact factor: 5.469

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  104 in total

1.  Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4): an archaeal DinB-like DNA polymerase with lesion-bypass properties akin to eukaryotic poleta.

Authors:  F Boudsocq; S Iwai; F Hanaoka; R Woodgate
Journal:  Nucleic Acids Res       Date:  2001-11-15       Impact factor: 16.971

2.  Localization of DNA polymerases eta and iota to the replication machinery is tightly co-ordinated in human cells.

Authors:  Patricia Kannouche; Antonio R Fernández de Henestrosa; Barry Coull; Antonio E Vidal; Colin Gray; Daniel Zicha; Roger Woodgate; Alan R Lehmann
Journal:  EMBO J       Date:  2003-03-03       Impact factor: 11.598

3.  Localization of DNA polymerases eta and iota to the replication machinery is tightly co-ordinated in human cells.

Authors:  Patricia Kannouche; Antonio R Fernández de Henestrosa; Barry Coull; Antonio E Vidal; Colin Gray; Daniel Zicha; Roger Woodgate; Alan R Lehmann
Journal:  EMBO J       Date:  2002-11-15       Impact factor: 11.598

4.  Translesion replication of benzo[a]pyrene and benzo[c]phenanthrene diol epoxide adducts of deoxyadenosine and deoxyguanosine by human DNA polymerase iota.

Authors:  Ekaterina G Frank; Jane M Sayer; Heiko Kroth; Eiji Ohashi; Haruo Ohmori; Donald M Jerina; Roger Woodgate
Journal:  Nucleic Acids Res       Date:  2002-12-01       Impact factor: 16.971

5.  Difference between deoxyribose- and tetrahydrofuran-type abasic sites in the in vivo mutagenic responses in yeast.

Authors:  Chie Otsuka; Sachi Sanadai; Yasuhiro Hata; Hisanori Okuto; Vladimir N Noskov; David Loakes; Kazuo Negishi
Journal:  Nucleic Acids Res       Date:  2002-12-01       Impact factor: 16.971

6.  Error-prone lesion bypass by human DNA polymerase eta.

Authors:  Y Zhang; F Yuan; X Wu; O Rechkoblit; J S Taylor; N E Geacintov; Z Wang
Journal:  Nucleic Acids Res       Date:  2000-12-01       Impact factor: 16.971

7.  Processing of DNA lesions by archaeal DNA polymerases from Sulfolobus solfataricus.

Authors:  Petr Grúz; Masatomi Shimizu; Francesca M Pisani; Mariarita De Felice; Yusuke Kanke; Takehiko Nohmi
Journal:  Nucleic Acids Res       Date:  2003-07-15       Impact factor: 16.971

8.  Structural basis for recruitment of translesion DNA polymerase Pol IV/DinB to the beta-clamp.

Authors:  Karen A Bunting; S Mark Roe; Laurence H Pearl
Journal:  EMBO J       Date:  2003-11-03       Impact factor: 11.598

9.  Translesion synthesis of acetylaminofluorene-dG adducts by DNA polymerase zeta is stimulated by yeast Rev1 protein.

Authors:  Dongyu Guo; Zhongwen Xie; Huiyun Shen; Bo Zhao; Zhigang Wang
Journal:  Nucleic Acids Res       Date:  2004-02-11       Impact factor: 16.971

10.  Identification of a novel REV1-interacting motif necessary for DNA polymerase kappa function.

Authors:  Eiji Ohashi; Tomo Hanafusa; Keijiro Kamei; Ihnyoung Song; Junya Tomida; Hiroshi Hashimoto; Cyrus Vaziri; Haruo Ohmori
Journal:  Genes Cells       Date:  2009-01-06       Impact factor: 1.891

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