Literature DB >> 10909866

Sensitivity enhanced NMR spectroscopy by quenching scalar coupling mediated relaxation: application to the direct observation of hydrogen bonds in 13C/15N-labeled proteins.

A Liu1, W Hu, S Qamar, A Majumdar.   

Abstract

In this paper, we demonstrate that the sensitivity of triple-resonance NMR experiments can be enhanced significantly through quenching scalar coupling mediated relaxation by using composite-pulse decoupling (CPD) or.an adiabatic decoupling sequence on aliphatic, in particular alpha-carbons in 13C/15N-labeled proteins. The CPD-HNCO experiment renders 50% sensitivity enhancement over the conventional CT-HNCO experiment performed on a 12 kDa FK506 binding protein, when a total of 266 ms of amide nitrogen-carbonyl carbon defocusing and refocusing periods is employed. This is a typical time period for the direct detection of hydrogen bonds in proteins via trans-hydrogen bond 3hJ(NC') couplings. The experimental data fit theoretical analysis well. The significant enhancement in sensitivity makes the experiment more applicable to larger-sized proteins without resorting to perdeuteration.

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Year:  2000        PMID: 10909866     DOI: 10.1023/a:1008340116418

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  18 in total

1.  Inhibition of FKBP rotamase activity by immunosuppressant FK506: twisted amide surrogate.

Authors:  M K Rosen; R F Standaert; A Galat; M Nakatsuka; S L Schreiber
Journal:  Science       Date:  1990-05-18       Impact factor: 47.728

2.  Solution structure of FKBP, a rotamase enzyme and receptor for FK506 and rapamycin.

Authors:  S W Michnick; M K Rosen; T J Wandless; M Karplus; S L Schreiber
Journal:  Science       Date:  1991-05-10       Impact factor: 47.728

3.  Pulse schemes for the measurement of 3JC'C gamma and 3JNC gamma scalar couplings in 15N,13C uniformly labeled proteins.

Authors:  R Konrat; D R Muhandiram; N A Farrow; L E Kay
Journal:  J Biomol NMR       Date:  1997-06       Impact factor: 2.835

4.  A cytosolic binding protein for the immunosuppressant FK506 has peptidyl-prolyl isomerase activity but is distinct from cyclophilin.

Authors:  J J Siekierka; S H Hung; M Poe; C S Lin; N H Sigal
Journal:  Nature       Date:  1989-10-26       Impact factor: 49.962

5.  Molecular cloning and overexpression of the human FK506-binding protein FKBP.

Authors:  R F Standaert; A Galat; G L Verdine; S L Schreiber
Journal:  Nature       Date:  1990-08-16       Impact factor: 49.962

6.  NMR experiments for resonance assignments of 13C, 15N doubly-labeled flexible polypeptides: application to the human prion protein hPrP(23-230).

Authors:  A Liu; R Riek; G Wider; C von Schroetter; R Zahn; K Wüthrich
Journal:  J Biomol NMR       Date:  2000-02       Impact factor: 2.835

7.  1H, 13C, and 15N assignments and secondary structure of the FK506 binding protein when bound to ascomycin.

Authors:  R X Xu; D Nettesheim; E T Olejniczak; R Meadows; G Gemmecker; S W Fesik
Journal:  Biopolymers       Date:  1993-04       Impact factor: 2.505

8.  Protein dynamics studied by rotating frame 15N spin relaxation times.

Authors:  T Szyperski; P Luginbühl; G Otting; P Güntert; K Wüthrich
Journal:  J Biomol NMR       Date:  1993-03       Impact factor: 2.835

9.  Backbone dynamics of proteins as studied by 15N inverse detected heteronuclear NMR spectroscopy: application to staphylococcal nuclease.

Authors:  L E Kay; D A Torchia; A Bax
Journal:  Biochemistry       Date:  1989-11-14       Impact factor: 3.162

10.  15N NMR relaxation studies of the FK506 binding protein: dynamic effects of ligand binding and implications for calcineurin recognition.

Authors:  J W Cheng; C A Lepre; J M Moore
Journal:  Biochemistry       Date:  1994-04-12       Impact factor: 3.162

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  4 in total

1.  Detection of very weak side chain-main chain hydrogen bonding interactions in medium-size 13C/15N-labeled proteins by sensitivity-enhanced NMR spectroscopy.

Authors:  A Liu; W Hu; A Majumdar; M K Rosen; D J Patel
Journal:  J Biomol NMR       Date:  2000-05       Impact factor: 2.835

2.  NMR detection of side chain-side chain hydrogen bonding interactions in 13C/15N-labeled proteins.

Authors:  A Liu; W Hu; A Majumdar; M K Rosen; D J Patel
Journal:  J Biomol NMR       Date:  2000-08       Impact factor: 2.835

3.  Dissecting non-canonical interactions in frameshift-stimulating mRNA pseudoknots.

Authors:  Peter V Cornish; David P Giedroc; Mirko Hennig
Journal:  J Biomol NMR       Date:  2006-07       Impact factor: 2.835

4.  TROSY of side-chain amides in large proteins.

Authors:  Aizhuo Liu; Lishan Yao; Yue Li; Honggao Yan
Journal:  J Magn Reson       Date:  2007-02-14       Impact factor: 2.229

  4 in total

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