Literature DB >> 10886028

MouseNet database: digital management of a large-scale mutagenesis project.

W Pargent1, S Heffner, K F Schäble, D Soewarto, H Fuchs, M Hrabé de Angelis.   

Abstract

The Munich ENU Mouse Mutagenesis Screen is a large-scale mutant production, phenotyping, and mapping project. It encompasses two animal breeding facilities and a number of screening groups located in the general area of Munich. A central database is required to manage and process the immense amount of data generated by the mutagenesis project. This database, which we named MouseNet(c), runs on a Sybase platform and will finally store and process all data from the entire project. In addition, the system comprises a portfolio of functions needed to support the workflow management of the core facility and the screening groups. MouseNet(c) will make all of the data available to the participating screening groups, and later to the international scientific community. MouseNet(c) will consist of three major software components:* Animal Management System (AMS)* Sample Tracking System (STS)* Result Documentation System (RDS)MouseNet(c) provides the following major advantages:* being accessible from different client platforms via the Internet* being a full-featured multi-user system (including access restriction and data locking mechanisms)* relying on a professional RDBMS (relational database management system) which runs on a UNIX server platform* supplying workflow functions and a variety of plausibility checks.

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Year:  2000        PMID: 10886028     DOI: 10.1007/s003350010112

Source DB:  PubMed          Journal:  Mamm Genome        ISSN: 0938-8990            Impact factor:   2.957


  9 in total

1.  Laboratory Animal Management Assistant (LAMA): a LIMS for active research colonies.

Authors:  Marko Milisavljevic; Taryn Hearty; Tony Y T Wong; Elodie Portales-Casamar; Elizabeth M Simpson; Wyeth W Wasserman
Journal:  Mamm Genome       Date:  2010-04-22       Impact factor: 2.957

2.  Development and implementation of a database system to manage a large-scale mouse ENU-mutagenesis program.

Authors:  Hiroshi Masuya; Yuji Nakai; Hiromi Motegi; Norio Niinaya; Yuichiro Kida; Yoshiharu Kaneko; Haruhiko Aritake; Nobuaki Suzuki; Jun Ishii; Koji Koorikawa; Tomohiro Suzuki; Maki Inoue; Kimio Kobayashi; Hideaki Toki; Yumiko Wada; Hideki Kaneda; Junko Ishijima; K Ryo Takahashi; Osamu Minowa; Tetsuo Noda; Shigeharu Wakana; Yoichi Gondo; Toshihiko Shiroishi
Journal:  Mamm Genome       Date:  2004-05       Impact factor: 2.957

Review 3.  Implementing large-scale ENU mutagenesis screens in North America.

Authors:  Amander T Clark; Daniel Goldowitz; Joseph S Takahashi; Martha Hotz Vitaterna; Sandra M Siepka; Luanne L Peters; Wayne N Frankel; George A Carlson; Janet Rossant; Joseph H Nadeau; Monica J Justice
Journal:  Genetica       Date:  2004-09       Impact factor: 1.082

Review 4.  Data and animal management software for large-scale phenotype screening.

Authors:  Keith A Ching; Michael P Cooke; Lisa M Tarantino; Hilmar Lapp
Journal:  Mamm Genome       Date:  2006-04-04       Impact factor: 2.957

Review 5.  Principles and application of LIMS in mouse clinics.

Authors:  Holger Maier; Christine Schütt; Ralph Steinkamp; Anja Hurt; Elida Schneltzer; Philipp Gormanns; Christoph Lengger; Mark Griffiths; David Melvin; Neha Agrawal; Rafael Alcantara; Arthur Evans; David Gannon; Simon Holroyd; Christian Kipp; Navis Pretheeba Raj; David Richardson; Sophie LeBlanc; Laurent Vasseur; Hiroshi Masuya; Kimio Kobayashi; Tomohiro Suzuki; Nobuhiko Tanaka; Shigeharu Wakana; Alison Walling; David Clary; Juan Gallegos; Helmut Fuchs; Martin Hrabě de Angelis; Valerie Gailus-Durner
Journal:  Mamm Genome       Date:  2015-07-25       Impact factor: 2.957

6.  RodentSQL: a software suite for colony management of animal protocols.

Authors:  Shrikant Pawar; Harshul Batra
Journal:  Future Sci OA       Date:  2018-07-27

7.  MausDB: an open source application for phenotype data and mouse colony management in large-scale mouse phenotyping projects.

Authors:  Holger Maier; Christoph Lengger; Bruno Simic; Helmut Fuchs; Valérie Gailus-Durner; Martin Hrabé de Angelis
Journal:  BMC Bioinformatics       Date:  2008-03-26       Impact factor: 3.169

8.  PBmice: an integrated database system of piggyBac (PB) insertional mutations and their characterizations in mice.

Authors:  Ling V Sun; Ke Jin; Yiming Liu; Wenwei Yang; Xing Xie; Lin Ye; Li Wang; Lin Zhu; Sheng Ding; Yi Su; Jie Zhou; Min Han; Yuan Zhuang; Tian Xu; Xiaohui Wu; Ning Gu; Yang Zhong
Journal:  Nucleic Acids Res       Date:  2007-10-11       Impact factor: 16.971

9.  Computational resources associating diseases with genotypes, phenotypes and exposures.

Authors:  Wenliang Zhang; Haiyue Zhang; Huan Yang; Miaoxin Li; Zhi Xie; Weizhong Li
Journal:  Brief Bioinform       Date:  2019-11-27       Impact factor: 11.622

  9 in total

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