Literature DB >> 10872329

The nucleotide sequence of the first externally suppressible--1 frameshift mutant, and of some nearby leaky frameshift mutants.

J F Atkins1, B P Nichols, S Thompson.   

Abstract

Nine mutants within a 23 nucleotide sequence of the trpE gene of Salmonella typhimurium have been characterized. trpE91, a mutant which is externally suppressible has a single base deletion. Eight (or nine) nucleotides upstream of this deletion, two independently isolated mutations have the same transversion. In combination with trpE91 these mutations lead to partial restoration of synthesis of anthranilate synthetase in the absence of external suppressors. In the transversion the sequence A CA is changed to A AA and this new sequence may be the site where frameshifting occurs to allow leakiness. Leakiness is displayed by two further mutants of the same sign as trpE91, and one of the opposite sign, in the absence of any base substitution or external suppressors. Specific sequences, e.g., UUUC, may be especially prone to frameshifting and this sequence is created at the site of the +1 frameshift mutant which displays leakiness. In the new reading frame generated by the two -1 frame leaky mutants, a tryptophan codon is encountered. Leakiness is necessarily detected in the absence of tryptophan and under these conditions there will be a shortage of charged tryptophan tRNA. The possibility of such functional imbalance leading to frameshifting in these mutants is discussed.

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Year:  1983        PMID: 10872329      PMCID: PMC555281          DOI: 10.1002/j.1460-2075.1983.tb01590.x

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  40 in total

1.  A rapid alkaline extraction procedure for screening recombinant plasmid DNA.

Authors:  H C Birnboim; J Doly
Journal:  Nucleic Acids Res       Date:  1979-11-24       Impact factor: 16.971

2.  Four-base codons ACCA, ACCU and ACCC are recognized by frameshift suppressor sufJ.

Authors:  L Bossi; J R Roth
Journal:  Cell       Date:  1981-08       Impact factor: 41.582

3.  Leaky +1 and -1 frameshift mutations at the same site in a yeast mitochondrial gene.

Authors:  T D Fox; B Weiss-Brummer
Journal:  Nature       Date:  1980-11-06       Impact factor: 49.962

4.  Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting transfer RNAs.

Authors:  T Ikemura
Journal:  J Mol Biol       Date:  1982-07-15       Impact factor: 5.469

5.  Nucleotide sequence of trpE of Salmonella typhimurium and its homology with the corresponding sequence of Escherichia coli.

Authors:  C Yanofsky; M vanCleemput
Journal:  J Mol Biol       Date:  1982-03-05       Impact factor: 5.469

6.  Lysis gene expression of RNA phage MS2 depends on a frameshift during translation of the overlapping coat protein gene.

Authors:  R A Kastelein; E Remaut; W Fiers; J van Duin
Journal:  Nature       Date:  1982-01-07       Impact factor: 49.962

7.  Sequencing end-labeled DNA with base-specific chemical cleavages.

Authors:  A M Maxam; W Gilbert
Journal:  Methods Enzymol       Date:  1980       Impact factor: 1.600

8.  Suppressible four-base glycine and proline codons in yeast.

Authors:  T F Donahue; P J Farabaugh; G R Fink
Journal:  Science       Date:  1981-04-24       Impact factor: 47.728

9.  Nucleotide sequence of Escherichia coli trpE. Anthranilate synthetase component I contains no tryptophan residues.

Authors:  B P Nichols; M van Cleemput; C Yanofsky
Journal:  J Mol Biol       Date:  1981-02-15       Impact factor: 5.469

10.  Frameshift suppression in Saccharomyces cerevisiae. V. Isolation and genetic properties of nongroup-specific suppressors.

Authors:  M R Culbertson; R F Gaber; C M Cummins
Journal:  Genetics       Date:  1982-11       Impact factor: 4.562

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  30 in total

1.  Suppression of nonsense mutations induced by expression of an RNA complementary to a conserved segment of 23S rRNA.

Authors:  N S Chernyaeva; E J Murgola; A S Mankin
Journal:  J Bacteriol       Date:  1999-09       Impact factor: 3.490

2.  Mutational eidence for a functional connection between two domains of 23S rRNA in translation termination.

Authors:  Alexey L Arkov; Klas O F Hedenstierna; Emanuel J Murgola
Journal:  J Bacteriol       Date:  2002-09       Impact factor: 3.490

3.  Sequences that direct significant levels of frameshifting are frequent in coding regions of Escherichia coli.

Authors:  Olga L Gurvich; Pavel V Baranov; Jiadong Zhou; Andrew W Hammer; Raymond F Gesteland; John F Atkins
Journal:  EMBO J       Date:  2003-11-03       Impact factor: 11.598

4.  Glycine tRNA mutants with normal anticodon loop size cause -1 frameshifting.

Authors:  D J O'Mahony; B H Mims; S Thompson; E J Murgola; J F Atkins
Journal:  Proc Natl Acad Sci U S A       Date:  1989-10       Impact factor: 11.205

5.  Doublet translocation at GGA is mediated directly by mutant tRNA(2Gly).

Authors:  F T Pagel; T M Tuohy; J F Atkins; E J Murgola
Journal:  J Bacteriol       Date:  1992-06       Impact factor: 3.490

Review 6.  A gripping tale of ribosomal frameshifting: extragenic suppressors of frameshift mutations spotlight P-site realignment.

Authors:  John F Atkins; Glenn R Björk
Journal:  Microbiol Mol Biol Rev       Date:  2009-03       Impact factor: 11.056

7.  tRNA anticodon replacement experiments show that ribosomal frameshifting can be caused by doublet decoding.

Authors:  A G Bruce; J F Atkins; R F Gesteland
Journal:  Proc Natl Acad Sci U S A       Date:  1986-07       Impact factor: 11.205

8.  Ribosomal frameshifting and dual-target antiactivation restrict quorum-sensing-activated transfer of a mobile genetic element.

Authors:  Joshua P Ramsay; Laura G L Tester; Anthony S Major; John T Sullivan; Christina D Edgar; Torsten Kleffmann; Jackson R Patterson-House; Drew A Hall; Warren P Tate; Michael F Hynes; Clive W Ronson
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-18       Impact factor: 11.205

9.  Mistranslation during phenylalanine starvation.

Authors:  J Parker; J Precup
Journal:  Mol Gen Genet       Date:  1986-07

10.  Suppression of a -1 frameshift mutation by a recessive tRNA suppressor which causes doublet decoding.

Authors:  D J O'Mahony; D Hughes; S Thompson; J F Atkins
Journal:  J Bacteriol       Date:  1989-07       Impact factor: 3.490

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