Literature DB >> 2425361

tRNA anticodon replacement experiments show that ribosomal frameshifting can be caused by doublet decoding.

A G Bruce, J F Atkins, R F Gesteland.   

Abstract

The expression of certain normal genes requires a specific ribosomal frameshift event because the mRNA has the coding information for one protein in two different reading frames. One of several possible mechanisms for this involves recognition of a nontriplet codon by a noncognate tRNA. The AGUC-decoding Escherichia coli tRNASer3 reads a GCA alanine codon to cause a -1 frameshift. Replacement of the anticodon of tRNAPhe with the anticodon of tRNASer3 allows the constructed tRNA to cause this frameshifting. By altering the anticodon loop nucleotides at positions 33-36 in the constructed tRNAPhe molecules, the tRNA was found to recognize a 2-base codon. Instead of the usual anticodon, positions 34-36, the nucleotides in positions 34 and 35 form essential base pairs with the first two positions of the alanine codon. The uridine in position 36 is also required but not for base pairing.

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Year:  1986        PMID: 2425361      PMCID: PMC323890          DOI: 10.1073/pnas.83.14.5062

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  33 in total

1.  Nucleotide sequence of a yeast Ty element: evidence for an unusual mechanism of gene expression.

Authors:  J Clare; P Farabaugh
Journal:  Proc Natl Acad Sci U S A       Date:  1985-05       Impact factor: 11.205

2.  A retrovirus-like strategy for expression of a fusion protein encoded by yeast transposon Ty1.

Authors:  J Mellor; S M Fulton; M J Dobson; W Wilson; S M Kingsman; A J Kingsman
Journal:  Nature       Date:  1985 Jan 17-23       Impact factor: 49.962

3.  "Two out of three": an alternative method for codon reading.

Authors:  U Lagerkvist
Journal:  Proc Natl Acad Sci U S A       Date:  1978-04       Impact factor: 11.205

4.  Incorrect aminoacylations catalysed by E. coli valyl-tRNA synthetase.

Authors:  R Giegé; D Kern; J P Ebel
Journal:  Biochimie       Date:  1972       Impact factor: 4.079

5.  Isolation and properties of tRNA nucleotidyl transferase from yeast.

Authors:  H Sternbach; F von der Haar; E Schlimme; E Gaertner; F Cramer
Journal:  Eur J Biochem       Date:  1971-09-24

6.  Suppressor sufJ: a novel type of tRNA mutant that induces translational frameshifting.

Authors:  L Bossi; D M Smith
Journal:  Proc Natl Acad Sci U S A       Date:  1984-10       Impact factor: 11.205

7.  Using T4 RNA ligase with DNA substrates.

Authors:  C A Brennan; A E Manthey; R I Gumport
Journal:  Methods Enzymol       Date:  1983       Impact factor: 1.600

8.  Specific interaction of anticodon loop residues with yeast phenylalanyl-tRNA synthetase.

Authors:  A G Bruce; O C Uhlenbeck
Journal:  Biochemistry       Date:  1982-08-17       Impact factor: 3.162

9.  Complete nucleotide sequence of bacteriophage T7 DNA and the locations of T7 genetic elements.

Authors:  J J Dunn; F W Studier
Journal:  J Mol Biol       Date:  1983-06-05       Impact factor: 5.469

10.  All eight unassigned reading frames of mouse mitochondrial DNA are expressed.

Authors:  N L Michael; J B Rothbard; R A Shiurba; H K Linke; G K Schoolnik; D A Clayton
Journal:  EMBO J       Date:  1984-12-20       Impact factor: 11.598

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  25 in total

Review 1.  P-site tRNA is a crucial initiator of ribosomal frameshifting.

Authors:  Pavel V Baranov; Raymond F Gesteland; John F Atkins
Journal:  RNA       Date:  2004-02       Impact factor: 4.942

Review 2.  A gripping tale of ribosomal frameshifting: extragenic suppressors of frameshift mutations spotlight P-site realignment.

Authors:  John F Atkins; Glenn R Björk
Journal:  Microbiol Mol Biol Rev       Date:  2009-03       Impact factor: 11.056

Review 3.  Programmed translational frameshifting.

Authors:  P J Farabaugh
Journal:  Microbiol Rev       Date:  1996-03

4.  Mutations in elongation factor EF-1 alpha affect the frequency of frameshifting and amino acid misincorporation in Saccharomyces cerevisiae.

Authors:  M G Sandbaken; M R Culbertson
Journal:  Genetics       Date:  1988-12       Impact factor: 4.562

5.  Suppression of a -1 frameshift mutation by a recessive tRNA suppressor which causes doublet decoding.

Authors:  D J O'Mahony; D Hughes; S Thompson; J F Atkins
Journal:  J Bacteriol       Date:  1989-07       Impact factor: 3.490

Review 6.  Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use.

Authors:  John F Atkins; Gary Loughran; Pramod R Bhatt; Andrew E Firth; Pavel V Baranov
Journal:  Nucleic Acids Res       Date:  2016-07-19       Impact factor: 16.971

Review 7.  Errors and alternatives in reading the universal genetic code.

Authors:  J Parker
Journal:  Microbiol Rev       Date:  1989-09

8.  Special peptidyl-tRNA molecules can promote translational frameshifting without slippage.

Authors:  A Vimaladithan; P J Farabaugh
Journal:  Mol Cell Biol       Date:  1994-12       Impact factor: 4.272

9.  Enhanced Recognition of HIV-1 Cryptic Epitopes Restricted by HLA Class I Alleles Associated With a Favorable Clinical Outcome.

Authors:  Anju Bansal; Tiffanie Mann; Sarah Sterrett; Binghao J Peng; Anne Bet; Jonathan M Carlson; Paul A Goepfert
Journal:  J Acquir Immune Defic Syndr       Date:  2015-09-01       Impact factor: 3.731

10.  CD8 T cell response and evolutionary pressure to HIV-1 cryptic epitopes derived from antisense transcription.

Authors:  Anju Bansal; Jonathan Carlson; Jiyu Yan; Olusimidele T Akinsiku; Malinda Schaefer; Steffanie Sabbaj; Anne Bet; David N Levy; Sonya Heath; Jianming Tang; Richard A Kaslow; Bruce D Walker; Thumbi Ndung'u; Philip J Goulder; David Heckerman; Eric Hunter; Paul A Goepfert
Journal:  J Exp Med       Date:  2010-01-11       Impact factor: 14.307

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