Literature DB >> 10859360

Positive cooperativity without domains or subunits in a monomeric membrane channel.

T K Rostovtseva1, T T Liu, M Colombini, V A Parsegian, S M Bezrukov.   

Abstract

The monomeric VDAC channel shows an accelerated pH titration of its transport properties with a Hill coefficient of about 2. This manifests itself as a sharp peak in conductance noise as well as a fast change in channel selectivity with pH. On the basis of the known structure of this channel, we propose that this cooperativity arises from a mechanically linked mobile pair of ionizable groups. Concerted movement of these groups between two states changes the distance from nearby electrostatic charge to influence the pK of the groups. This model of pH-dependent motion produces positive cooperative behavior that fits the observations without need for subunits or identifiable domains within the protein. The mathematical formalism has never required such domains, but these are generally considered an essential part of cooperative behavior in proteins. The present proposal reduces the size of a cooperative unit to a minimum, extending the limits of what is perceived to be possible. Together with large-scale conformational transitions, these subtle cooperative structural changes may allow proteins to adapt, with high sensitivity, to changes in their environment. They might also be relatively easy to engineer into a protein.

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Year:  2000        PMID: 10859360      PMCID: PMC16628          DOI: 10.1073/pnas.140115397

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  23 in total

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Authors:  J Tytgat; P Hess
Journal:  Nature       Date:  1992-10-01       Impact factor: 49.962

2.  Selectivity changes in site-directed mutants of the VDAC ion channel: structural implications.

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Journal:  Science       Date:  1990-03-09       Impact factor: 47.728

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Authors:  E B Zambrowicz; M Colombini
Journal:  Biophys J       Date:  1993-09       Impact factor: 4.033

Review 4.  Allosteric receptors after 30 years.

Authors:  J P Changeux; S J Edelstein
Journal:  Neuron       Date:  1998-11       Impact factor: 17.173

5.  Two-sided action of protons on an inward rectifier K+ channel (IRK1).

Authors:  R Z Sabirov; Y Okada; S Oiki
Journal:  Pflugers Arch       Date:  1997-02       Impact factor: 3.657

6.  Thermodynamic and kinetic cooperativity in ligand binding to multiple sites on a protein: Ca2+ activation of an ATP-driven Ca pump.

Authors:  C Tanford; J A Reynolds; E A Johnson
Journal:  Proc Natl Acad Sci U S A       Date:  1985-07       Impact factor: 11.205

7.  Isolation and properties of the porin of the outer mitochondrial membrane from Neurospora crassa.

Authors:  H Freitag; R Benz; W Neupert
Journal:  Methods Enzymol       Date:  1983       Impact factor: 1.600

8.  The topology of VDAC as probed by biotin modification.

Authors:  J Song; C Midson; E Blachly-Dyson; M Forte; M Colombini
Journal:  J Biol Chem       Date:  1998-09-18       Impact factor: 5.157

9.  Amino-terminal myristoylation induces cooperative calcium binding to recoverin.

Authors:  J B Ames; T Porumb; T Tanaka; M Ikura; L Stryer
Journal:  J Biol Chem       Date:  1995-03-03       Impact factor: 5.157

10.  Structure of the outer mitochondrial membrane: ordered arrays of porelike subunits in outer-membrane fractions from Neurospora crassa mitochondria.

Authors:  C A Mannella
Journal:  J Cell Biol       Date:  1982-09       Impact factor: 10.539

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  22 in total

1.  Electrostatics explains the shift in VDAC gating with salt activity gradient.

Authors:  Victor Levadny; Marco Colombini; Xiao Xian Li; Vicente M Aguilella
Journal:  Biophys J       Date:  2002-04       Impact factor: 4.033

2.  Residue ionization and ion transport through OmpF channels.

Authors:  Ekaterina M Nestorovich; Tatiana K Rostovtseva; Sergey M Bezrukov
Journal:  Biophys J       Date:  2003-12       Impact factor: 4.033

3.  Designed to penetrate: time-resolved interaction of single antibiotic molecules with bacterial pores.

Authors:  Ekaterina M Nestorovich; Christophe Danelon; Mathias Winterhalter; Sergey M Bezrukov
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-15       Impact factor: 11.205

4.  Electrostatic influence on ion transport through the alphaHL channel.

Authors:  M Misakian; J J Kasianowicz
Journal:  J Membr Biol       Date:  2003-10-01       Impact factor: 1.843

5.  Oligomeric states of the voltage-dependent anion channel and cytochrome c release from mitochondria.

Authors:  Ran Zalk; Adrian Israelson; Erez S Garty; Heftsi Azoulay-Zohar; Varda Shoshan-Barmatz
Journal:  Biochem J       Date:  2005-02-15       Impact factor: 3.857

6.  Saccharomyces cerevisiae porin pore forms complexes with mitochondrial outer membrane proteins Om14p and Om45p.

Authors:  Susann Lauffer; Katrin Mäbert; Cornelia Czupalla; Theresia Pursche; Bernard Hoflack; Gerhard Rödel; Udo Krause-Buchholz
Journal:  J Biol Chem       Date:  2012-03-29       Impact factor: 5.157

7.  NMR structural investigation of the mitochondrial outer membrane protein VDAC and its interaction with antiapoptotic Bcl-xL.

Authors:  Thomas J Malia; Gerhard Wagner
Journal:  Biochemistry       Date:  2007-01-16       Impact factor: 3.162

Review 8.  Structure of the voltage dependent anion channel: state of the art.

Authors:  Vito De Pinto; Simona Reina; Francesca Guarino; Angela Messina
Journal:  J Bioenerg Biomembr       Date:  2008-06       Impact factor: 2.945

9.  Dynamics of nucleotides in VDAC channels: structure-specific noise generation.

Authors:  Tatiana K Rostovtseva; Alexander Komarov; Sergey M Bezrukov; Marco Colombini
Journal:  Biophys J       Date:  2002-01       Impact factor: 4.033

10.  Salting out the ionic selectivity of a wide channel: the asymmetry of OmpF.

Authors:  Antonio Alcaraz; Ekaterina M Nestorovich; Marcel Aguilella-Arzo; Vicente M Aguilella; Sergey M Bezrukov
Journal:  Biophys J       Date:  2004-08       Impact factor: 4.033

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