Literature DB >> 10815770

Mixed QM/MM molecular electrostatic potentials.

B Hernández1, F J Luque, M Orozco.   

Abstract

A new method is presented for the calculation of the Molecular Electrostatic Potential (MEP) in large systems. Based on the mixed Quantum Mechanics/Molecular Mechanics (QM/MM) approach, the method assumes both a quantum and classical description for the molecule, and the calculation of the MEP in the space surrounding the molecule is made using this dual treatment. The MEP at points close to the molecule is computed using a full QM formalism, while a pure classical evaluation of the MEP is used for points located at large distances from the molecule. The algorithm allows the user to select the desired level of accuracy in the MEP, so that the definition of the regions where the MEP is computed at the classical or QM levels is adjusted automatically. The potential use of this QM/MM MEP in molecular modeling studies is discussed.

Mesh:

Year:  2000        PMID: 10815770     DOI: 10.1023/a:1008111820916

Source DB:  PubMed          Journal:  J Comput Aided Mol Des        ISSN: 0920-654X            Impact factor:   3.686


  11 in total

1.  Fractional description of free energies of solvation.

Authors:  F J Luque; X Barril; M Orozco
Journal:  J Comput Aided Mol Des       Date:  1999-03       Impact factor: 3.686

2.  Quantum chemical studies of morphine-like opiate narcotics. Effect of N-substituent variations.

Authors:  G H Loew; D S Berkowitz
Journal:  J Med Chem       Date:  1975-07       Impact factor: 7.446

3.  A practical procedure for the determination of electrostatic charges of large molecules.

Authors:  M Orozco; F J Luque
Journal:  J Comput Aided Mol Des       Date:  1990-12       Impact factor: 3.686

4.  Is polarization important in cation-pi interactions?

Authors:  E Cubero; F J Luque; M Orozco
Journal:  Proc Natl Acad Sci U S A       Date:  1998-05-26       Impact factor: 11.205

5.  Calculation of the total electrostatic energy of a macromolecular system: solvation energies, binding energies, and conformational analysis.

Authors:  M K Gilson; B Honig
Journal:  Proteins       Date:  1988

6.  Electrostatic properties of cytosine monohydrate from diffraction data.

Authors:  H P Weber; B M Craven
Journal:  Acta Crystallogr B       Date:  1990-08-01

7.  MEPSIM: a computational package for analysis and comparison of molecular electrostatic potentials.

Authors:  F Sanz; F Manaut; J Rodríguez; E Lozoya; E López-de-Briñas
Journal:  J Comput Aided Mol Des       Date:  1993-06       Impact factor: 3.686

8.  Quantum chemical studies on molecular determinants for drug action.

Authors:  H Weinstein; R Osman; S Topiol; J P Green
Journal:  Ann N Y Acad Sci       Date:  1981       Impact factor: 5.691

9.  Theoretical study of the protonation and tautomerization of adenosine, formycin, and their 2-NH2 and 2-F derivatives: functional implications in the mechanism of reaction of adenosine deaminase.

Authors:  M Orozco; E I Canela; R Franco
Journal:  Mol Pharmacol       Date:  1989-02       Impact factor: 4.436

10.  A quantum chemical study of the enzymatic deamination of benzoadenine derivatives. A theoretical model of the interactions occurring between nucleosides and the active site of adenosine deaminase.

Authors:  M Orozco; E I Canela; R Franco
Journal:  Eur J Biochem       Date:  1990-02-22
View more
  2 in total

1.  Fast estimation of hydrogen-bonding donor and acceptor propensities: a GMIPp study.

Authors:  Albert Salichs; M López; V Segarra; Modesto Orozco; F Javier Luque
Journal:  J Comput Aided Mol Des       Date:  2002 Aug-Sep       Impact factor: 3.686

Review 2.  Computational Simulations to Guide Enzyme-Mediated Prodrug Activation.

Authors:  Milica Markovic; Shimon Ben-Shabat; Arik Dahan
Journal:  Int J Mol Sci       Date:  2020-05-20       Impact factor: 5.923

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.