Literature DB >> 2092084

A practical procedure for the determination of electrostatic charges of large molecules.

M Orozco1, F J Luque.   

Abstract

A practical procedure for the precise determination of electrostatic charges, which are evaluated by fitting the rigorous quantum mechanical molecular electrostatic potential to a monopole-monopole expression, is presented. The proposal of this procedure arises from the study of the minimum requirements necessary to obtain reliable electrostatic charges. Such a study is focused on: (i) the dependence of the electrostatic charges on the set of points where the quantum mechanical and the monopole-monopole molecular electrostatic potentials are fitted; thus, both the influence of the number of points and their distribution in layers located out of the van der Waals radii of the atoms are examined, and (ii) the reliability of the use of fractional models for the evaluation of electrostatic charges of large molecules. Results point out that the optimum number of points is defined by a density of points ranging from 0.45 to 0.60 points/A2 when four layers (separated by 0.2 A) are considered. Nevertheless, the use of only two layers (separated by 0.4 A) for large molecules is recommended, thus enabling one to obtain reliable charges at a reduced computational cost. Moreover, results justify the use of fractional models for the determination of electrostatic charges of extremely large molecules, even when aromatic structures exist.

Mesh:

Substances:

Year:  1990        PMID: 2092084     DOI: 10.1007/BF00117406

Source DB:  PubMed          Journal:  J Comput Aided Mol Des        ISSN: 0920-654X            Impact factor:   3.686


  1 in total

Review 1.  Computer-aided molecular design.

Authors:  J A McCammon
Journal:  Science       Date:  1987-10-23       Impact factor: 47.728

  1 in total
  4 in total

1.  Mixed QM/MM molecular electrostatic potentials.

Authors:  B Hernández; F J Luque; M Orozco
Journal:  J Comput Aided Mol Des       Date:  2000-05       Impact factor: 3.686

2.  On the suitability of semiempirical calculations as sources of force field parameters.

Authors:  C Alemán; M Orozco
Journal:  J Comput Aided Mol Des       Date:  1992-08       Impact factor: 3.686

3.  N.m.r. determination of the solution conformation and dynamics of the A.G mismatch in the d(CGCAAATTGGCG)2 dodecamer.

Authors:  A N Lane; T C Jenkins; D J Brown; T Brown
Journal:  Biochem J       Date:  1991-10-01       Impact factor: 3.857

4.  QSAR and conformational analysis of the antiinflammatory agent amfenac and analogues.

Authors:  J Ruiz; M López; J Milà; E Lozoya; J J Lozano; R Pouplana
Journal:  J Comput Aided Mol Des       Date:  1993-04       Impact factor: 3.686

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.