Literature DB >> 7578044

The B form to Z form transition of poly(dG-m5dC) is sensitive to neutral solutes through an osmotic stress.

R S Preisler1, H H Chen, M F Colombo, Y Choe, B J Short, D C Rau.   

Abstract

Several neutral solutes, ranging in size from methanol to a tetrasaccharide, stachyose, are shown to stabilize the left-handed Z form of the methylated polynucleotide poly(dG-m5dC). The action of these solutes is consistent with an osmotic stress, that is, with their effect on water chemical potentials coupled to a difference in the number of associated water molecules between the B and Z conformations. The apparent difference in hydration between the two forms is, however, dependent on the particular solute used to probe the reaction. The effect of solutes is not consistent either with a direct binding of solute or with an indirect effect on electrostatics or ion binding through changes in the solution dielectric constant. The interplay of NaCl and neutral solute in modulating the B-Z transition suggests that salt also could be stabilizing the Z form through an osmotic stress.

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Year:  1995        PMID: 7578044     DOI: 10.1021/bi00044a017

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  10 in total

1.  Osmotic stress, crowding, preferential hydration, and binding: A comparison of perspectives.

Authors:  V A Parsegian; R P Rand; D C Rau
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-11       Impact factor: 11.205

2.  The role of hydration on the mechanism of allosteric regulation: in situ measurements of the oxygen-linked kinetics of water binding to hemoglobin.

Authors:  Andrés G Salvay; J Raúl Grigera; Marcio F Colombo
Journal:  Biophys J       Date:  2003-01       Impact factor: 4.033

3.  Differences between EcoRI nonspecific and "star" sequence complexes revealed by osmotic stress.

Authors:  Nina Y Sidorova; Donald C Rau
Journal:  Biophys J       Date:  2004-10       Impact factor: 4.033

4.  A contribution to the theory of preferential interaction coefficients.

Authors:  J Michael Schurr; David P Rangel; Sergio R Aragon
Journal:  Biophys J       Date:  2005-07-29       Impact factor: 4.033

5.  In disperse solution, "osmotic stress" is a restricted case of preferential interactions.

Authors:  S N Timasheff
Journal:  Proc Natl Acad Sci U S A       Date:  1998-06-23       Impact factor: 11.205

6.  Differences in water release for the binding of EcoRI to specific and nonspecific DNA sequences.

Authors:  N Y Sidorova; D C Rau
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-29       Impact factor: 11.205

7.  Stimulation by polyols of the two ryanodine receptor isoforms of frog skeletal muscle.

Authors:  T Murayama; N Kurebayashi; Y Ogawa
Journal:  J Muscle Res Cell Motil       Date:  1998-01       Impact factor: 2.698

8.  Dynamical change of mitochondrial DNA induced in the living cell by perturbing the electrochemical gradient.

Authors:  M Coppey-Moisan; A C Brunet; R Morais; J Coppey
Journal:  Biophys J       Date:  1996-11       Impact factor: 4.033

9.  A structural transition in duplex DNA induced by ethylene glycol.

Authors:  Greg P Brewood; Theresa Aliwarga; J Michael Schurr
Journal:  J Phys Chem B       Date:  2008-09-30       Impact factor: 2.991

10.  Linking Temperature, Cation Concentration and Water Activity for the B to Z Conformational Transition in DNA.

Authors:  Jaime M Ferreira; Richard D Sheardy
Journal:  Molecules       Date:  2018-07-21       Impact factor: 4.411

  10 in total

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