Literature DB >> 10747030

Functional characterization of SR and SR-related genes in Caenorhabditis elegans.

D Longman1, I L Johnstone, J F Cáceres.   

Abstract

The SR proteins constitute a family of nuclear phosphoproteins, which are required for constitutive splicing and also influence alternative splicing regulation. Initially, it was suggested that SR proteins were functionally redundant in constitutive splicing. However, differences have been observed in alternative splicing regulation, suggesting unique functions for individual SR proteins. Homology searches of the Caenorhabditis elegans genome identified seven genes encoding putative orthologues of the human factors SF2/ASF, SRp20, SC35, SRp40, SRp75 and p54, and also several SR-related genes. To address the issue of functional redundancy, we used dsRNA interference (RNAi) to inhibit specific SR protein function during C.elegans development. RNAi with CeSF2/ASF caused late embryonic lethality, suggesting that this gene has an essential function during C.elegans development. RNAi with other SR genes resulted in no obvious phenotype, which is indicative of gene redundancy. Simultaneous interference of two or more SR proteins in certain combinations caused lethality or other developmental defects. RNAi with CeSRPK, an SR protein kinase, resulted in early embryonic lethality, suggesting an essential role for SR protein phosphorylation during development.

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Year:  2000        PMID: 10747030      PMCID: PMC310231          DOI: 10.1093/emboj/19.7.1625

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  104 in total

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Journal:  Trends Genet       Date:  1999-09       Impact factor: 11.639

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3.  RNAi in C. elegans: soaking in the genome sequence.

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Authors:  J L Manley; R Tacke
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Review 5.  The superfamily of arginine/serine-rich splicing factors.

Authors:  X D Fu
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6.  Genetic enhancement of RNA-processing defects by a dominant mutation in B52, the Drosophila gene for an SR protein splicing factor.

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Journal:  Mol Cell Biol       Date:  1995-11       Impact factor: 4.272

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Authors:  S Lopato; E Waigmann; A Barta
Journal:  Plant Cell       Date:  1996-12       Impact factor: 11.277

8.  Regulation of alternative splicing in vivo by overexpression of antagonistic splicing factors.

Authors:  J F Cáceres; S Stamm; D M Helfman; A R Krainer
Journal:  Science       Date:  1994-09-16       Impact factor: 47.728

9.  Specific phosphorylation of SR proteins by mammalian DNA topoisomerase I.

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Journal:  Nature       Date:  1996-05-02       Impact factor: 49.962

10.  Pre-mRNA splicing in plants: characterization of Ser/Arg splicing factors.

Authors:  S Lopato; A Mayeda; A R Krainer; A Barta
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  74 in total

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Journal:  RNA       Date:  2002-04       Impact factor: 4.942

Review 2.  Sorting out the complexity of SR protein functions.

Authors:  B R Graveley
Journal:  RNA       Date:  2000-09       Impact factor: 4.942

3.  A single ancient origin for prototypical serine/arginine-rich splicing factors.

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Review 4.  The RNAissance family: SR proteins as multifaceted regulators of gene expression.

Authors:  Jonathan M Howard; Jeremy R Sanford
Journal:  Wiley Interdiscip Rev RNA       Date:  2014-08-22       Impact factor: 9.957

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Journal:  Mol Cell Biol       Date:  2001-08       Impact factor: 4.272

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Journal:  Mol Biol Cell       Date:  2003-06-13       Impact factor: 4.138

7.  Rhythmic Behavior Is Controlled by the SRm160 Splicing Factor in Drosophila melanogaster.

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Journal:  Genetics       Date:  2017-08-11       Impact factor: 4.562

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Authors:  John E Dominy; Yoonjin Lee; Zachary Gerhart-Hines; Pere Puigserver
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9.  SMU-2 and SMU-1, Caenorhabditis elegans homologs of mammalian spliceosome-associated proteins RED and fSAP57, work together to affect splice site choice.

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Journal:  Mol Cell Biol       Date:  2004-08       Impact factor: 4.272

10.  Regulation of alternative splicing by SRrp86 and its interacting proteins.

Authors:  Jun Li; Ian C Hawkins; Christopher D Harvey; Jennifer L Jennings; Andrew J Link; James G Patton
Journal:  Mol Cell Biol       Date:  2003-11       Impact factor: 4.272

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