Literature DB >> 25155147

The RNAissance family: SR proteins as multifaceted regulators of gene expression.

Jonathan M Howard1, Jeremy R Sanford.   

Abstract

Serine and arginine-rich (SR) proteins play multiple roles in the eukaryotic gene expression pathway. Initially described as constitutive and alternative splicing factors, now it is clear that SR proteins are key determinants of exon identity and function as molecular adaptors, linking the pre-messenger RNA (pre-mRNA) to the splicing machinery. In addition, now SR proteins are implicated in many aspects of mRNA and noncoding RNA (ncRNA) processing well beyond splicing. These unexpected roles, including RNA transcription, export, translation, and decay, may prove to be the rule rather than the exception. To simply define, this family of RNA-binding proteins as splicing factors belies the broader roles of SR proteins in post-transcriptional gene expression.
© 2014 John Wiley & Sons, Ltd.

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Year:  2014        PMID: 25155147      PMCID: PMC4268343          DOI: 10.1002/wrna.1260

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev RNA        ISSN: 1757-7004            Impact factor:   9.957


  189 in total

1.  The C-terminal domain of the largest subunit of RNA polymerase II interacts with a novel set of serine/arginine-rich proteins.

Authors:  A Yuryev; M Patturajan; Y Litingtung; R V Joshi; C Gentile; M Gebara; J L Corden
Journal:  Proc Natl Acad Sci U S A       Date:  1996-07-09       Impact factor: 11.205

2.  The RNA-splicing factor PSF/p54 controls DNA-topoisomerase I activity by a direct interaction.

Authors:  T Straub; P Grue; A Uhse; M Lisby; B R Knudsen; T O Tange; O Westergaard; F Boege
Journal:  J Biol Chem       Date:  1998-10-09       Impact factor: 5.157

3.  Sequence-specific RNA binding by an SR protein requires RS domain phosphorylation: creation of an SRp40-specific splicing enhancer.

Authors:  R Tacke; Y Chen; J L Manley
Journal:  Proc Natl Acad Sci U S A       Date:  1997-02-18       Impact factor: 11.205

Review 4.  Shuttling SR proteins: more than splicing factors.

Authors:  Laure Twyffels; Cyril Gueydan; Véronique Kruys
Journal:  FEBS J       Date:  2011-08-24       Impact factor: 5.542

5.  SR proteins SRp20 and 9G8 contribute to efficient export of herpes simplex virus 1 mRNAs.

Authors:  Laurimar Escudero-Paunetto; Ling Li; Felicia P Hernandez; Rozanne M Sandri-Goldin
Journal:  Virology       Date:  2010-03-12       Impact factor: 3.616

6.  Antagonistic SR proteins regulate alternative splicing of tumor-related Rac1b downstream of the PI3-kinase and Wnt pathways.

Authors:  Vânia Gonçalves; Paulo Matos; Peter Jordan
Journal:  Hum Mol Genet       Date:  2009-07-13       Impact factor: 6.150

7.  Regulation of alternative splicing in vivo by overexpression of antagonistic splicing factors.

Authors:  J F Cáceres; S Stamm; D M Helfman; A R Krainer
Journal:  Science       Date:  1994-09-16       Impact factor: 47.728

8.  Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts.

Authors:  Jeremy R Sanford; Xin Wang; Matthew Mort; Natalia Vanduyn; David N Cooper; Sean D Mooney; Howard J Edenberg; Yunlong Liu
Journal:  Genome Res       Date:  2008-12-30       Impact factor: 9.043

9.  SRPK1 and Clk/Sty protein kinases show distinct substrate specificities for serine/arginine-rich splicing factors.

Authors:  K Colwill; L L Feng; J M Yeakley; G D Gish; J F Cáceres; T Pawson; X D Fu
Journal:  J Biol Chem       Date:  1996-10-04       Impact factor: 5.157

10.  Zinc-induced modulation of SRSF6 activity alters Bim splicing to promote generation of the most potent apoptotic isoform BimS.

Authors:  Hirokazu Hara; Tatsuya Takeda; Nozomi Yamamoto; Keisuke Furuya; Kazuya Hirose; Tetsuro Kamiya; Tetsuo Adachi
Journal:  FEBS J       Date:  2013-06-03       Impact factor: 5.542

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  77 in total

Review 1.  RNA modifications and structures cooperate to guide RNA-protein interactions.

Authors:  Cole J T Lewis; Tao Pan; Auinash Kalsotra
Journal:  Nat Rev Mol Cell Biol       Date:  2017-02-01       Impact factor: 94.444

2.  Structural-functional interactions of NS1-BP protein with the splicing and mRNA export machineries for viral and host gene expression.

Authors:  Ke Zhang; Guijun Shang; Abhilash Padavannil; Juan Wang; Ramanavelan Sakthivel; Xiang Chen; Min Kim; Matthew G Thompson; Adolfo García-Sastre; Kristen W Lynch; Zhijian J Chen; Yuh Min Chook; Beatriz M A Fontoura
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-11       Impact factor: 11.205

Review 3.  The diverse functions of the hepatitis B core/capsid protein (HBc) in the viral life cycle: Implications for the development of HBc-targeting antivirals.

Authors:  Ahmed Diab; Adrien Foca; Fabien Zoulim; David Durantel; Ourania Andrisani
Journal:  Antiviral Res       Date:  2017-11-26       Impact factor: 5.970

Review 4.  Modulation of aberrant splicing in human RNA diseases by chemical compounds.

Authors:  Naoyuki Kataoka
Journal:  Hum Genet       Date:  2017-03-31       Impact factor: 4.132

5.  Juvenile hormone-regulated alternative splicing of the taiman gene primes the ecdysteroid response in adult mosquitoes.

Authors:  Pengcheng Liu; Xiaonan Fu; Jinsong Zhu
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-30       Impact factor: 11.205

6.  Splicing factor SRSF1 controls T cell hyperactivity and systemic autoimmunity.

Authors:  Takayuki Katsuyama; Hao Li; Denis Comte; George C Tsokos; Vaishali R Moulton
Journal:  J Clin Invest       Date:  2019-12-02       Impact factor: 14.808

Review 7.  Insights from structures of cancer-relevant pre-mRNA splicing factors.

Authors:  Clara L Kielkopf
Journal:  Curr Opin Genet Dev       Date:  2017-11-10       Impact factor: 5.578

Review 8.  Radiation-induced translational control of gene expression.

Authors:  Amy Wahba; Stacey L Lehman; Philip J Tofilon
Journal:  Translation (Austin)       Date:  2016-12-01

Review 9.  Normal and altered pre-mRNA processing in the DMD gene.

Authors:  Sylvie Tuffery-Giraud; Julie Miro; Michel Koenig; Mireille Claustres
Journal:  Hum Genet       Date:  2017-06-09       Impact factor: 4.132

Review 10.  Alternative polyadenylation of mRNA precursors.

Authors:  Bin Tian; James L Manley
Journal:  Nat Rev Mol Cell Biol       Date:  2016-09-28       Impact factor: 94.444

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