Literature DB >> 10681449

Noise-based switches and amplifiers for gene expression.

J Hasty1, J Pradines, M Dolnik, J J Collins.   

Abstract

The regulation of cellular function is often controlled at the level of gene transcription. Such genetic regulation usually consists of interacting networks, whereby gene products from a single network can act to control their own expression or the production of protein in another network. Engineered control of cellular function through the design and manipulation of such networks lies within the constraints of current technology. Here we develop a model describing the regulation of gene expression and elucidate the effects of noise on the formulation. We consider a single network derived from bacteriophage lambda and construct a two-parameter deterministic model describing the temporal evolution of the concentration of lambda repressor protein. Bistability in the steady-state protein concentration arises naturally, and we show how the bistable regime is enhanced with the addition of the first operator site in the promotor region. We then show how additive and multiplicative external noise can be used to regulate expression. In the additive case, we demonstrate the utility of such control through the construction of a protein switch, whereby protein production is turned "on" and "off" by using short noise pulses. In the multiplicative case, we show that small deviations in the transcription rate can lead to large fluctuations in the production of protein, and we describe how these fluctuations can be used to amplify protein production significantly. These results suggest that an external noise source could be used as a switch and/or amplifier for gene expression. Such a development could have important implications for gene therapy.

Entities:  

Mesh:

Substances:

Year:  2000        PMID: 10681449      PMCID: PMC15756          DOI: 10.1073/pnas.040411297

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  17 in total

1.  Construction of a genetic toggle switch in Escherichia coli.

Authors:  T S Gardner; C R Cantor; J J Collins
Journal:  Nature       Date:  2000-01-20       Impact factor: 49.962

2.  Single-molecule imaging of RNA polymerase-DNA interactions in real time.

Authors:  Y Harada; T Funatsu; K Murakami; Y Nonoyama; A Ishihama; T Yanagida
Journal:  Biophys J       Date:  1999-02       Impact factor: 4.033

Review 3.  Effects of electromagnetic fields in experimental fracture repair.

Authors:  M W Otter; K J McLeod; C T Rubin
Journal:  Clin Orthop Relat Res       Date:  1998-10       Impact factor: 4.176

4.  Activation of Na+ and K+ pumping modes of (Na,K)-ATPase by an oscillating electric field.

Authors:  D S Liu; R D Astumian; T Y Tsong
Journal:  J Biol Chem       Date:  1990-05-05       Impact factor: 5.157

5.  Model genetic circuits encoding autoregulatory transcription factors.

Authors:  A D Keller
Journal:  J Theor Biol       Date:  1995-01-21       Impact factor: 2.691

6.  Bacteriophage lambda repressor and cro protein: interactions with operator DNA.

Authors:  A D Johnson; C O Pabo; R T Sauer
Journal:  Methods Enzymol       Date:  1980       Impact factor: 1.600

Review 7.  How the lambda repressor and cro work.

Authors:  M Ptashne; A Jeffrey; A D Johnson; R Maurer; B J Meyer; C O Pabo; T M Roberts; R T Sauer
Journal:  Cell       Date:  1980-01       Impact factor: 41.582

Review 8.  lambda Repressor and cro--components of an efficient molecular switch.

Authors:  A D Johnson; A R Poteete; G Lauer; R T Sauer; G K Ackers; M Ptashne
Journal:  Nature       Date:  1981-11-19       Impact factor: 49.962

9.  Recognition and processing of randomly fluctuating electric signals by Na,K-ATPase.

Authors:  T D Xie; P Marszalek; Y D Chen; T Y Tsong
Journal:  Biophys J       Date:  1994-09       Impact factor: 4.033

10.  Circuit simulation of genetic networks.

Authors:  H H McAdams; L Shapiro
Journal:  Science       Date:  1995-08-04       Impact factor: 47.728

View more
  150 in total

1.  Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations.

Authors:  T B Kepler; T C Elston
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

2.  Intrinsic noise in gene regulatory networks.

Authors:  M Thattai; A van Oudenaarden
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-03       Impact factor: 11.205

3.  Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion.

Authors:  A Becskei; B Séraphin; L Serrano
Journal:  EMBO J       Date:  2001-05-15       Impact factor: 11.598

4.  Attenuation of noise in ultrasensitive signaling cascades.

Authors:  Mukund Thattai; Alexander van Oudenaarden
Journal:  Biophys J       Date:  2002-06       Impact factor: 4.033

5.  Fluctuations and slow variables in genetic networks.

Authors:  R Bundschuh; F Hayot; C Jayaprakash
Journal:  Biophys J       Date:  2003-03       Impact factor: 4.033

6.  An ensemble method for identifying regulatory circuits with special reference to the qa gene cluster of Neurospora crassa.

Authors:  D Battogtokh; D K Asch; M E Case; J Arnold; H-B Schuttler
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-11       Impact factor: 11.205

7.  Near-critical phenomena in intracellular metabolite pools.

Authors:  Johan Elf; Johan Paulsson; Otto G Berg; Måns Ehrenberg
Journal:  Biophys J       Date:  2003-01       Impact factor: 4.033

8.  Prediction and measurement of an autoregulatory genetic module.

Authors:  Farren J Isaacs; Jeff Hasty; Charles R Cantor; J J Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-13       Impact factor: 11.205

9.  Robust, tunable genetic memory from protein sequestration combined with positive feedback.

Authors:  Tatenda Shopera; William R Henson; Andrew Ng; Young Je Lee; Kenneth Ng; Tae Seok Moon
Journal:  Nucleic Acids Res       Date:  2015-09-17       Impact factor: 16.971

10.  Bottom-up approaches in synthetic biology and biomaterials for tissue engineering applications.

Authors:  Mitchell S Weisenberger; Tara L Deans
Journal:  J Ind Microbiol Biotechnol       Date:  2018-03-19       Impact factor: 3.346

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.