Literature DB >> 10677822

Water-macromolecule interactions by NMR: a quadrature-free constant-time approach and its application to CI2.

G Melacini1, R Boelens, R Kaptein.   

Abstract

A pulse sequence is proposed to select water magnetization with enhanced specificity through a synergetic combination of several filtering principles. This approach relies on a constant-time evolution period implemented without quadrature detection, which results in a square root 2 increase in signal-to-noise ratios as compared to traditional non-selective methods for water filtration. In addition, the quadrature-free constant-time block facilitates the implementation of the water flip-back strategy, which leads to further gains in sensitivity. The proposed experiment was applied to unlabeled HEW lysozyme and to 15N-labeled chymotrypsin inhibitor 2 which was partially or non 13C-enriched. Water molecules belonging to a spine of hydration between two pseudo beta-sheet strands were identified, solving previously reported discrepancies between the X-ray and refined NMR structure of CI2. The proposed experiment in particularly suitable for hydration studies of mixtures of labeled and unlabeled components, such as ligand-macromolecule complexes.

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Year:  1999        PMID: 10677822     DOI: 10.1023/a:1008316612907

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  36 in total

1.  A reassessment of the structure of chymotrypsin inhibitor 2 (CI-2) using time-averaged NMR restraints.

Authors:  A P Nanzer; F M Poulsen; W F van Gunsteren; A E Torda
Journal:  Biochemistry       Date:  1994-12-06       Impact factor: 3.162

2.  Determination of the residence time of water molecules hydrating B'- DNA and B-DNA, by one-dimensional zero-enhancement nuclear Overhauser effect spectroscopy.

Authors:  A T Phan; J L Leroy; M Guéron
Journal:  J Mol Biol       Date:  1999-02-19       Impact factor: 5.469

3.  ROESY with water flip back for high-field NMR of biomolecules.

Authors:  D B Fulton; F Ni
Journal:  J Magn Reson       Date:  1997-11       Impact factor: 2.229

4.  Separation of intramolecular NOE and exchange peaks in water exchange spectroscopy using spin-echo filters.

Authors:  S Mori; J M Berg; P C van Zijl
Journal:  J Biomol NMR       Date:  1996-01       Impact factor: 2.835

5.  Use of a water flip-back pulse in the homonuclear NOESY experiment.

Authors:  G Lippens; C Dhalluin; J M Wieruszeski
Journal:  J Biomol NMR       Date:  1995-04       Impact factor: 2.835

6.  Solvent exposure of specific nuclei of angiotensin II determined by NMR solvent saturation method.

Authors:  T P Pitner; J D Glickson; J Dadok; G R Marshall
Journal:  Nature       Date:  1974-08-16       Impact factor: 49.962

7.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

8.  Signal enhancement using 45 degrees water flipback for 3D 15N-edited ROESY and NOESY HMQC and HSQC.

Authors:  J M Gruschus; J A Ferretti
Journal:  J Magn Reson       Date:  1999-10       Impact factor: 2.229

9.  Editing of chemical exchange-relayed NOEs in NMR experiments for the observation of protein-water interactions.

Authors:  G Melacini; R Kaptein; R Boelens
Journal:  J Magn Reson       Date:  1999-02       Impact factor: 2.229

10.  1H, 13C and 15N chemical shift referencing in biomolecular NMR.

Authors:  D S Wishart; C G Bigam; J Yao; F Abildgaard; H J Dyson; E Oldfield; J L Markley; B D Sykes
Journal:  J Biomol NMR       Date:  1995-09       Impact factor: 2.835

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  5 in total

1.  Probing the surface of a sweet protein: NMR study of MNEI with a paramagnetic probe.

Authors:  N Niccolai; R Spadaccini; M Scarselli; A Bernini; O Crescenzi; O Spiga; A Ciutti; D Di Maro; L Bracci; C Dalvit; P A Temussi
Journal:  Protein Sci       Date:  2001-08       Impact factor: 6.725

2.  Radiation damping compensation of selective pulses in water-protein exchange spectroscopy.

Authors:  B Cutting; J H Chen; D Moskau; G Bodenhausen
Journal:  J Biomol NMR       Date:  2000-08       Impact factor: 2.835

3.  Identification of compounds with binding affinity to proteins via magnetization transfer from bulk water.

Authors:  C Dalvit; P Pevarello; M Tatò; M Veronesi; A Vulpetti; M Sundström
Journal:  J Biomol NMR       Date:  2000-09       Impact factor: 2.835

4.  Rapid protein fold determination using secondary chemical shifts and cross-hydrogen bond 15N-13C' scalar couplings (3hbJNC').

Authors:  A M Bonvin; K Houben; M Guenneugues; R Kaptein; R Boelens
Journal:  J Biomol NMR       Date:  2001-11       Impact factor: 2.835

5.  Improvement of hydrogen bond geometry in protein NMR structures by residual dipolar couplings--an assessment of the interrelation of NMR restraints.

Authors:  Pernille Rose Jensen; Jacob Bock Axelsen; Mathilde Hauge Lerche; Flemming M Poulsen
Journal:  J Biomol NMR       Date:  2004-01       Impact factor: 2.835

  5 in total

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