Literature DB >> 10653641

Solution structure of the CBM10 cellulose binding module from Pseudomonas xylanase A.

S Raghothama1, P J Simpson, L Szabó, T Nagy, H J Gilbert, M P Williamson.   

Abstract

Plant cell wall hydrolases generally have a modular structure consisting of a catalytic domain linked to one or more noncatalytic carbohydrate-binding modules (CBMs), whose common function is to attach the enzyme to the polymeric substrate. Xylanase A from Pseudomonas fluorescens subsp. cellulosa (Pf Xyn10A) consists of a family 10 catalytic domain, an N-terminal family IIa cellulose-binding module, and an internal family 10 cellulose-binding module. The structure of the 45-residue family 10 CBM has been determined in solution using NMR. It consists of two antiparallel beta-sheets, one with two strands and one with three, with a short alpha-helix across one face of the three-stranded sheet. There is a high density of aromatic residues on one side of the protein, including three aromatic residues (Tyr8, Trp22, and Trp24), which are exposed and form a flat surface on one face, in a classical polysaccharide-binding arrangement. The fold is closely similar to that of the oligonucleotide/oligosaccharide-binding (OB) fold, but appears to have arisen by convergent evolution, because there is no sequence similarity, and the presumed binding sites are on different faces.

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Year:  2000        PMID: 10653641     DOI: 10.1021/bi992163+

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  20 in total

1.  Characterization of XYN10B, a modular xylanase from the ruminal protozoan Polyplastron multivesiculatum, with a family 22 carbohydrate-binding module that binds to cellulose.

Authors:  Estelle Devillard; Christel Bera-Maillet; Harry J Flint; Karen P Scott; C James Newbold; R John Wallace; Jean-Pierre Jouany; Evelyne Forano
Journal:  Biochem J       Date:  2003-07-15       Impact factor: 3.857

Review 2.  The biochemistry and structural biology of plant cell wall deconstruction.

Authors:  Harry J Gilbert
Journal:  Plant Physiol       Date:  2010-04-20       Impact factor: 8.340

3.  Circular permutation provides an evolutionary link between two families of calcium-dependent carbohydrate binding modules.

Authors:  Cedric Montanier; James E Flint; David N Bolam; Hefang Xie; Ziyuan Liu; Artur Rogowski; David P Weiner; Supriya Ratnaparkhe; Didier Nurizzo; Shirley M Roberts; Johan P Turkenburg; Gideon J Davies; Harry J Gilbert
Journal:  J Biol Chem       Date:  2010-07-21       Impact factor: 5.157

4.  Identification of novel beta-mannan- and beta-glucan-binding modules: evidence for a superfamily of carbohydrate-binding modules.

Authors:  A Sunna; M D Gibbs; P L Bergquist
Journal:  Biochem J       Date:  2001-06-15       Impact factor: 3.857

5.  A Novel Carbohydrate-binding Module from Sugar Cane Soil Metagenome Featuring Unique Structural and Carbohydrate Affinity Properties.

Authors:  Bruna Medeia Campos; Marcelo Vizona Liberato; Thabata Maria Alvarez; Letícia Maria Zanphorlin; Gabriela Cristina Ematsu; Hernane Barud; Igor Polikarpov; Roberto Ruller; Harry J Gilbert; Ana Carolina de Mattos Zeri; Fabio Marcio Squina
Journal:  J Biol Chem       Date:  2016-09-12       Impact factor: 5.157

6.  Access to cellulose limits the efficiency of enzymatic hydrolysis: the role of amorphogenesis.

Authors:  Valdeir Arantes; Jack N Saddler
Journal:  Biotechnol Biofuels       Date:  2010-02-23       Impact factor: 6.040

7.  Structural basis for entropy-driven cellulose binding by a type-A cellulose-binding module (CBM) and bacterial expansin.

Authors:  Nikolaos Georgelis; Neela H Yennawar; Daniel J Cosgrove
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-27       Impact factor: 11.205

8.  Functional characterization and mutation analysis of family 11, Carbohydrate-Binding Module (CtCBM11) of cellulosomal bifunctional cellulase from Clostridium thermocellum.

Authors:  S Bharali; R K Purama; A Majumder; C M G A Fontes; A Goyal
Journal:  Indian J Microbiol       Date:  2007-07-08       Impact factor: 2.461

Review 9.  Polysaccharide degradation systems of the saprophytic bacterium Cellvibrio japonicus.

Authors:  Jeffrey G Gardner
Journal:  World J Microbiol Biotechnol       Date:  2016-06-04       Impact factor: 3.312

10.  The modular architecture of Cellvibrio japonicus mannanases in glycoside hydrolase families 5 and 26 points to differences in their role in mannan degradation.

Authors:  Deborah Hogg; Gavin Pell; Paul Dupree; Florence Goubet; Susana M Martín-Orúe; Sylvie Armand; Harry J Gilbert
Journal:  Biochem J       Date:  2003-05-01       Impact factor: 3.857

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