Literature DB >> 12523937

The modular architecture of Cellvibrio japonicus mannanases in glycoside hydrolase families 5 and 26 points to differences in their role in mannan degradation.

Deborah Hogg1, Gavin Pell, Paul Dupree, Florence Goubet, Susana M Martín-Orúe, Sylvie Armand, Harry J Gilbert.   

Abstract

beta-1,4-Mannanases (mannanases), which hydrolyse mannans and glucomannans, are located in glycoside hydrolase families (GHs) 5 and 26. To investigate whether there are fundamental differences in the molecular architecture and biochemical properties of GH5 and GH26 mannanases, four genes encoding these enzymes were isolated from Cellvibrio japonicus and the encoded glycoside hydrolases were characterized. The four genes, man5A, man5B, man5C and man26B, encode the mannanases Man5A, Man5B, Man5C and Man26B, respectively. Man26B consists of an N-terminal signal peptide linked via an extended serine-rich region to a GH26 catalytic domain. Man5A, Man5B and Man5C contain GH5 catalytic domains and non-catalytic carbohydrate-binding modules (CBMs) belonging to families 2a, 5 and 10; Man5C in addition contains a module defined as X4 of unknown function. The family 10 and 2a CBMs bound to crystalline cellulose and ivory nut crystalline mannan, displaying very similar properties to the corresponding family 10 and 2a CBMs from Cellvibrio cellulases and xylanases. CBM5 bound weakly to these crystalline polysaccharides. The catalytic domains of Man5A, Man5B and Man26B hydrolysed galactomannan and glucomannan, but displayed no activity against crystalline mannan or cellulosic substrates. Although Man5C was less active against glucomannan and galactomannan than the other mannanases, it did attack crystalline ivory nut mannan. All the enzymes exhibited classic endo-activity producing a mixture of oligosaccharides during the initial phase of the reaction, although their mode of action against manno-oligosaccharides and glucomannan indicated differences in the topology of the respective substrate-binding sites. This report points to a different role for GH5 and GH26 mannanases from C. japonicus. We propose that as the GH5 enzymes contain CBMs that bind crystalline polysaccharides, these enzymes are likely to target mannans that are integral to the plant cell wall, while GH26 mannanases, which lack CBMs and rapidly release mannose from polysaccharides and oligosaccharides, target the storage polysaccharide galactomannan and manno-oligosaccharides.

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Year:  2003        PMID: 12523937      PMCID: PMC1223318          DOI: 10.1042/BJ20021860

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  39 in total

1.  The location of the ligand-binding site of carbohydrate-binding modules that have evolved from a common sequence is not conserved.

Authors:  M Czjzek; D N Bolam; A Mosbah; J Allouch; C M Fontes; L M Ferreira; O Bornet; V Zamboni; H Darbon; N L Smith; G W Black; B Henrissat; H J Gilbert
Journal:  J Biol Chem       Date:  2001-10-22       Impact factor: 5.157

2.  Crystal structure of mannanase 26A from Pseudomonas cellulosa and analysis of residues involved in substrate binding.

Authors:  D Hogg; E J Woo; D N Bolam; V A McKie; H J Gilbert; R W Pickersgill
Journal:  J Biol Chem       Date:  2001-05-29       Impact factor: 5.157

3.  Evidence for synergy between family 2b carbohydrate binding modules in Cellulomonas fimi xylanase 11A.

Authors:  D N Bolam; H Xie; P White; P J Simpson; S M Hancock; M P Williamson; H J Gilbert
Journal:  Biochemistry       Date:  2001-02-27       Impact factor: 3.162

4.  Co-operative binding of triplicate carbohydrate-binding modules from a thermophilic xylanase.

Authors:  Alisdair B Boraston; Bradley W McLean; Grace Chen; Anson Li; R Antony J Warren; Douglas G Kilburn
Journal:  Mol Microbiol       Date:  2002-01       Impact factor: 3.501

5.  Polysaccharide analysis using carbohydrate gel electrophoresis: a method to study plant cell wall polysaccharides and polysaccharide hydrolases.

Authors:  Florence Goubet; Peter Jackson; Michael J Deery; Paul Dupree
Journal:  Anal Biochem       Date:  2002-01-01       Impact factor: 3.365

6.  Binding specificity and thermodynamics of a family 9 carbohydrate-binding module from Thermotoga maritima xylanase 10A.

Authors:  A B Boraston; A L Creagh; M M Alam; J M Kormos; P Tomme; C A Haynes; R A Warren; D G Kilburn
Journal:  Biochemistry       Date:  2001-05-29       Impact factor: 3.162

7.  A new family of rhamnogalacturonan lyases contains an enzyme that binds to cellulose.

Authors:  V A McKie; J P Vincken; A G Voragen; L A van den Broek; E Stimson; H J Gilbert
Journal:  Biochem J       Date:  2001-04-01       Impact factor: 3.857

8.  The X6 "thermostabilizing" domains of xylanases are carbohydrate-binding modules: structure and biochemistry of the Clostridium thermocellum X6b domain.

Authors:  S J Charnock; D N Bolam; J P Turkenburg; H J Gilbert; L M Ferreira; G J Davies; C M Fontes
Journal:  Biochemistry       Date:  2000-05-02       Impact factor: 3.162

9.  Cellulose-binding domains promote hydrolysis of different sites on crystalline cellulose.

Authors:  G Carrard; A Koivula; H Söderlund; P Béguin
Journal:  Proc Natl Acad Sci U S A       Date:  2000-09-12       Impact factor: 11.205

10.  Analysis of binding of the family 2a carbohydrate-binding module from Cellulomonas fimi xylanase 10A to cellulose: specificity and identification of functionally important amino acid residues.

Authors:  B W McLean; M R Bray; A B Boraston; N R Gilkes; C A Haynes; D G Kilburn
Journal:  Protein Eng       Date:  2000-11
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  30 in total

Review 1.  The biochemistry and structural biology of plant cell wall deconstruction.

Authors:  Harry J Gilbert
Journal:  Plant Physiol       Date:  2010-04-20       Impact factor: 8.340

2.  CelAB, a multifunctional cellulase encoded by Teredinibacter turnerae T7902T, a culturable symbiont isolated from the wood-boring marine bivalve Lyrodus pedicellatus.

Authors:  Nathan A Ekborg; Wendy Morrill; Adam M Burgoyne; Li Li; Daniel L Distel
Journal:  Appl Environ Microbiol       Date:  2007-10-12       Impact factor: 4.792

3.  Exploring Multimodularity in Plant Cell Wall Deconstruction: STRUCTURAL AND FUNCTIONAL ANALYSIS OF Xyn10C CONTAINING THE CBM22-1-CBM22-2 TANDEM.

Authors:  M Angela Sainz-Polo; Beatriz González; Margarita Menéndez; F I Javier Pastor; Julia Sanz-Aparicio
Journal:  J Biol Chem       Date:  2015-05-22       Impact factor: 5.157

4.  Modular glucuronoxylan-specific xylanase with a family CBM35 carbohydrate-binding module.

Authors:  Susana Valeria Valenzuela; Pilar Diaz; F I Javier Pastor
Journal:  Appl Environ Microbiol       Date:  2012-03-23       Impact factor: 4.792

5.  Expression and characterization of a Bifidobacterium adolescentis beta-mannanase carrying mannan-binding and cell association motifs.

Authors:  Evelina Kulcinskaja; Anna Rosengren; Romany Ibrahim; Katarína Kolenová; Henrik Stålbrand
Journal:  Appl Environ Microbiol       Date:  2012-10-12       Impact factor: 4.792

Review 6.  The endo-beta-mannanase gene families in Arabidopsis, rice, and poplar.

Authors:  Joshua S Yuan; Xiaohan Yang; Jingru Lai; Hong Lin; Zong-Ming Cheng; Hiroyuki Nonogaki; Feng Chen
Journal:  Funct Integr Genomics       Date:  2006-08-08       Impact factor: 3.410

7.  Characterization of mannanase from Bacillus sp., a novel Codium fragile cell wall-degrading bacterium.

Authors:  Suae Kim; Mi-Hwa Lee; Eun-Sook Lee; Young-Do Nam; Dong-Ho Seo
Journal:  Food Sci Biotechnol       Date:  2017-09-21       Impact factor: 2.391

8.  Heterologous production, assembly, and secretion of a minicellulosome by Clostridium acetobutylicum ATCC 824.

Authors:  Florence Mingardon; Stéphanie Perret; Anne Bélaïch; Chantal Tardif; Jean-Pierre Bélaïch; Henri-Pierre Fierobe
Journal:  Appl Environ Microbiol       Date:  2005-03       Impact factor: 4.792

9.  Localisation and characterisation of cell wall mannan polysaccharides in Arabidopsis thaliana.

Authors:  Michael G Handford; Timothy C Baldwin; Florence Goubet; Tracy A Prime; Joanne Miles; Xiaolan Yu; Paul Dupree
Journal:  Planta       Date:  2003-07-03       Impact factor: 4.116

10.  Towards designer cellulosomes in Clostridia: mannanase enrichment of the cellulosomes produced by Clostridium cellulolyticum.

Authors:  Stéphanie Perret; Anne Bélaich; Henri-Pierre Fierobe; Jean-Pierre Bélaich; Chantal Tardif
Journal:  J Bacteriol       Date:  2004-10       Impact factor: 3.490

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