Literature DB >> 10634505

Some unusual nucleic acid bases are products of hydroxyl radical oxidation of DNA and RNA.

J Barciszewski1, M Z Barciszewska, G Siboska, S I Rattan, B F Clark.   

Abstract

There are over 100 modified bases and their derivatives found in RNA and DNA. For some of them, data concerning their properties, synthesis and roles in cellular metabolism are available, but for others the knowledge of their functions and biosynthetic pathways is rather limited. We have analysed the chemical structure of modified nucleosides of DNA and RNA considering mainly their putative synthetic routes. On this basis we suggest, that in addition to enzymatic biosynthetic pathways well established for some odd bases, many rare nucleosides can be recognised as products of random chemical reactions. We identify them as primary or secondary products of the reaction of nucleic acids with hydroxyl radicals, the most active oxidising agent in the cell.

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Year:  1999        PMID: 10634505     DOI: 10.1023/a:1007058602594

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  43 in total

1.  Replication of DNA templates containing 5-formyluracil, a major oxidative lesion of thymine in DNA.

Authors:  Q M Zhang; H Sugiyama; I Miyabe; S Matsuda; I Saito; S Yonei
Journal:  Nucleic Acids Res       Date:  1997-10-15       Impact factor: 16.971

Review 2.  Genetic dissection of synthesis and function of modified nucleosides in bacterial transfer RNA.

Authors:  G R Björk
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1995

Review 3.  Hypermodified bases in DNA.

Authors:  J H Gommers-Ampt; P Borst
Journal:  FASEB J       Date:  1995-08       Impact factor: 5.191

Review 4.  Aging processes, DNA damage, and repair.

Authors:  B A Gilchrest; V A Bohr
Journal:  FASEB J       Date:  1997-04       Impact factor: 5.191

5.  Increased longevity of kinetin-fed Zaprionus fruitflies is accompanied by their reduced fecundity and enhanced catalase activity.

Authors:  S P Sharma; J Kaur; S I Rattan
Journal:  Biochem Mol Biol Int       Date:  1997-04

6.  2'-O-methyl-5-formylcytidine (f5Cm), a new modified nucleotide at the 'wobble' of two cytoplasmic tRNAs Leu (NAA) from bovine liver.

Authors:  J P Païs de Barros; G Keith; C El Adlouni; A L Glasser; G Mack; G Dirheimer; J Desgrès
Journal:  Nucleic Acids Res       Date:  1996-04-15       Impact factor: 16.971

Review 7.  Damage to DNA by reactive oxygen and nitrogen species: role in inflammatory disease and progression to cancer.

Authors:  H Wiseman; B Halliwell
Journal:  Biochem J       Date:  1996-01-01       Impact factor: 3.857

8.  Kinetin delays the onset of ageing characteristics in human fibroblasts.

Authors:  S I Rattan; B F Clark
Journal:  Biochem Biophys Res Commun       Date:  1994-06-15       Impact factor: 3.575

Review 9.  Repair of oxidative damage to DNA: enzymology and biology.

Authors:  B Demple; L Harrison
Journal:  Annu Rev Biochem       Date:  1994       Impact factor: 23.643

10.  A new function of S-adenosylmethionine: the ribosyl moiety of AdoMet is the precursor of the cyclopentenediol moiety of the tRNA wobble base queuine.

Authors:  R K Slany; M Bösl; P F Crain; H Kersten
Journal:  Biochemistry       Date:  1993-08-03       Impact factor: 3.162

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  26 in total

Review 1.  Oxidative damage to RNA in aging and neurodegenerative disorders.

Authors:  Akihiko Nunomura; Paula I Moreira; Rudy J Castellani; Hyoung-Gon Lee; Xiongwei Zhu; Mark A Smith; George Perry
Journal:  Neurotox Res       Date:  2012-06-06       Impact factor: 3.911

2.  An active role for the ribosome in determining the fate of oxidized mRNA.

Authors:  Carrie L Simms; Benjamin H Hudson; John W Mosior; Ali S Rangwala; Hani S Zaher
Journal:  Cell Rep       Date:  2014-11-13       Impact factor: 9.423

3.  Consistent global structures of complex RNA states through multidimensional chemical mapping.

Authors:  Clarence Yu Cheng; Fang-Chieh Chou; Wipapat Kladwang; Siqi Tian; Pablo Cordero; Rhiju Das
Journal:  Elife       Date:  2015-06-02       Impact factor: 8.140

Review 4.  Quality control of chemically damaged RNA.

Authors:  Carrie L Simms; Hani S Zaher
Journal:  Cell Mol Life Sci       Date:  2016-05-07       Impact factor: 9.261

Review 5.  Oxidative damage to RNA: mechanisms, consequences, and diseases.

Authors:  Qiongman Kong; Chien-Liang Glenn Lin
Journal:  Cell Mol Life Sci       Date:  2010-02-11       Impact factor: 9.261

6.  Cellular antioxidant enzyme activity and biomarkers for oxidative stress are affected by heat stress.

Authors:  Walid S Habashy; Marie C Milfort; Romdhane Rekaya; Samuel E Aggrey
Journal:  Int J Biometeorol       Date:  2019-07-27       Impact factor: 3.787

7.  N6-Furfuryladenine is protective in Huntington's disease models by signaling huntingtin phosphorylation.

Authors:  Laura E Bowie; Tamara Maiuri; Melanie Alpaugh; Michelle Gabriel; Nicolas Arbez; Danny Galleguillos; Claudia L K Hung; Shreya Patel; Jianrun Xia; Nicholas T Hertz; Christopher A Ross; David W Litchfield; Simonetta Sipione; Ray Truant
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-09       Impact factor: 11.205

Review 8.  Markers of oxidant stress that are clinically relevant in aging and age-related disease.

Authors:  Kimberly D Jacob; Nicole Noren Hooten; Andrzej R Trzeciak; Michele K Evans
Journal:  Mech Ageing Dev       Date:  2013-02-18       Impact factor: 5.432

9.  RNA under attack: cellular handling of RNA damage.

Authors:  Elisabeth J Wurtmann; Sandra L Wolin
Journal:  Crit Rev Biochem Mol Biol       Date:  2009 Jan-Feb       Impact factor: 8.250

10.  Sublethal RNA oxidation as a mechanism for neurodegenerative disease.

Authors:  Rudy J Castellani; Akihiko Nunomura; Raj K Rolston; Paula I Moreira; Atsushi Takeda; George Perry; Mark A Smith
Journal:  Int J Mol Sci       Date:  2008-05-20       Impact factor: 6.208

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