Literature DB >> 27155660

Quality control of chemically damaged RNA.

Carrie L Simms1, Hani S Zaher2.   

Abstract

The "central dogma" of molecular biology describes how information contained in DNA is transformed into RNA and finally into proteins. In order for proteins to maintain their functionality in both the parent cell and subsequent generations, it is essential that the information encoded in DNA and RNA remains unaltered. DNA and RNA are constantly exposed to damaging agents, which can modify nucleic acids and change the information they encode. While much is known about how cells respond to damaged DNA, the importance of protecting RNA has only become appreciated over the past decade. Modification of the nucleobase through oxidation and alkylation has long been known to affect its base-pairing properties during DNA replication. Similarly, recent studies have begun to highlight some of the unwanted consequences of chemical damage on mRNA decoding during translation. Oxidation and alkylation of mRNA appear to have drastic effects on the speed and fidelity of protein synthesis. As some mRNAs can persist for days in certain tissues, it is not surprising that it has recently emerged that mRNA-surveillance and RNA-repair pathways have evolved to clear or correct damaged mRNA.

Entities:  

Keywords:  8-Oxoguanosine; Alkylation; O6-Methylguanosine; Oxidation; RNA damage; RNA surveillance; Ribosome; Translation

Mesh:

Substances:

Year:  2016        PMID: 27155660      PMCID: PMC5025279          DOI: 10.1007/s00018-016-2261-7

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  119 in total

1.  A role for ubiquitin in the clearance of nonfunctional rRNAs.

Authors:  Kotaro Fujii; Makoto Kitabatake; Tomoko Sakata; Atsumi Miyata; Mutsuhito Ohno
Journal:  Genes Dev       Date:  2009-04-15       Impact factor: 11.361

2.  Oxidized messenger RNA induces translation errors.

Authors:  Mikiei Tanaka; P Boon Chock; Earl R Stadtman
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-26       Impact factor: 11.205

3.  Oxygens in DNA are main targets for ethylnitrosourea in normal and xeroderma pigmentosum fibroblasts and fetal rat brain cells.

Authors:  B Singer; W J Bodell; J E Cleaver; G H Thomas; M F Rajewsky; W Thon
Journal:  Nature       Date:  1978-11-02       Impact factor: 49.962

4.  Mammalian polynucleotide phosphorylase is an intermembrane space RNase that maintains mitochondrial homeostasis.

Authors:  Hsiao-Wen Chen; Robert N Rainey; Cynthia E Balatoni; David W Dawson; Joshua J Troke; Sylwia Wasiak; Jason S Hong; Heidi M McBride; Carla M Koehler; Michael A Teitell; Samuel W French
Journal:  Mol Cell Biol       Date:  2006-09-11       Impact factor: 4.272

5.  Oxidative Modification of miR-184 Enables It to Target Bcl-xL and Bcl-w.

Authors:  Jian-Xun Wang; Jie Gao; Su-Ling Ding; Kun Wang; Jian-Qin Jiao; Yin Wang; Teng Sun; Lu-Yu Zhou; Bo Long; Xiao-Jie Zhang; Qian Li; Jin-Ping Liu; Chang Feng; Jia Liu; Ying Gong; Zhixia Zhou; Pei-Feng Li
Journal:  Mol Cell       Date:  2015-05-28       Impact factor: 17.970

6.  Isolation and characterization of MMS-sensitive mutants of Saccharomyces cerevisiae.

Authors:  L Prakash; S Prakash
Journal:  Genetics       Date:  1977-05       Impact factor: 4.562

Review 7.  Oxidative RNA damage and neurodegeneration.

Authors:  A Nunomura; P I Moreira; A Takeda; M A Smith; G Perry
Journal:  Curr Med Chem       Date:  2007       Impact factor: 4.530

8.  Ribosome dysfunction is an early event in Alzheimer's disease.

Authors:  Qunxing Ding; William R Markesbery; Qinghua Chen; Feng Li; Jeffrey N Keller
Journal:  J Neurosci       Date:  2005-10-05       Impact factor: 6.709

9.  UNG-initiated base excision repair is the major repair route for 5-fluorouracil in DNA, but 5-fluorouracil cytotoxicity depends mainly on RNA incorporation.

Authors:  Henrik Sahlin Pettersen; Torkild Visnes; Cathrine Broberg Vågbø; Eva K Svaasand; Berit Doseth; Geir Slupphaug; Bodil Kavli; Hans E Krokan
Journal:  Nucleic Acids Res       Date:  2011-07-10       Impact factor: 16.971

10.  A new yeast poly(A) polymerase complex involved in RNA quality control.

Authors:  Stepánka Vanácová; Jeannette Wolf; Georges Martin; Diana Blank; Sabine Dettwiler; Arno Friedlein; Hanno Langen; Gérard Keith; Walter Keller
Journal:  PLoS Biol       Date:  2005-04-19       Impact factor: 8.029

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  33 in total

Review 1.  Current perspectives on the clinical implications of oxidative RNA damage in aging research: challenges and opportunities.

Authors:  Zhijie Xu; Jinzhou Huang; Ming Gao; Guijie Guo; Shuangshuang Zeng; Xi Chen; Xiang Wang; Zhicheng Gong; Yuanliang Yan
Journal:  Geroscience       Date:  2020-06-11       Impact factor: 7.713

Review 2.  Mechanisms of MTH1 inhibition-induced DNA strand breaks: The slippery slope from the oxidized nucleotide pool to genotoxic damage.

Authors:  Priyamvada Rai; Robert W Sobol
Journal:  DNA Repair (Amst)       Date:  2019-03-02

Review 3.  8-Oxoguanine: from oxidative damage to epigenetic and epitranscriptional modification.

Authors:  Ja Young Hahm; Jongyeun Park; Eun-Sook Jang; Sung Wook Chi
Journal:  Exp Mol Med       Date:  2022-10-21       Impact factor: 12.153

Review 4.  Biology of aging: Oxidative stress and RNA oxidation.

Authors:  Manisekaran Hemagirri; Sreenivasan Sasidharan
Journal:  Mol Biol Rep       Date:  2022-04-21       Impact factor: 2.742

5.  Why are Hoogsteen base pairs energetically disfavored in A-RNA compared to B-DNA?

Authors:  Atul Rangadurai; Huiqing Zhou; Dawn K Merriman; Nathalie Meiser; Bei Liu; Honglue Shi; Eric S Szymanski; Hashim M Al-Hashimi
Journal:  Nucleic Acids Res       Date:  2018-11-16       Impact factor: 16.971

Review 6.  Noncoding RNA Surveillance: The Ends Justify the Means.

Authors:  Cedric Belair; Soyeong Sim; Sandra L Wolin
Journal:  Chem Rev       Date:  2017-10-12       Impact factor: 60.622

7.  Insights into the base-pairing preferences of 8-oxoguanosine on the ribosome.

Authors:  Erica N Thomas; Carrie L Simms; Hannah E Keedy; Hani S Zaher
Journal:  Nucleic Acids Res       Date:  2019-10-10       Impact factor: 16.971

Review 8.  How do cells cope with RNA damage and its consequences?

Authors:  Liewei L Yan; Hani S Zaher
Journal:  J Biol Chem       Date:  2019-08-22       Impact factor: 5.157

9.  Mammalian APE1 controls miRNA processing and its interactome is linked to cancer RNA metabolism.

Authors:  Giulia Antoniali; Fabrizio Serra; Lisa Lirussi; Mikiei Tanaka; Chiara D'Ambrosio; Shiheng Zhang; Slobodanka Radovic; Emiliano Dalla; Yari Ciani; Andrea Scaloni; Mengxia Li; Silvano Piazza; Gianluca Tell
Journal:  Nat Commun       Date:  2017-10-06       Impact factor: 14.919

Review 10.  Axonal mRNA translation in neurological disorders.

Authors:  Julie Qiaojin Lin; Francesca W van Tartwijk; Christine E Holt
Journal:  RNA Biol       Date:  2020-09-29       Impact factor: 4.652

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