Literature DB >> 10620304

Fast events in protein folding: structural volume changes accompanying the early events in the N-->I transition of apomyoglobin induced by ultrafast pH jump.

S Abbruzzetti1, E Crema, L Masino, A Vecli, C Viappiani, J R Small, L J Libertini, E W Small.   

Abstract

Ultrafast, laser-induced pH jump with time-resolved photoacoustic detection has been used to investigate the early protonation steps leading to the formation of the compact acid intermediate (I) of apomyoglobin (ApoMb). When ApoMb is in its native state (N) at pH 7.0, rapid acidification induced by a laser pulse leads to two parallel protonation processes. One reaction can be attributed to the binding of protons to the imidazole rings of His24 and His119. Reaction with imidazole leads to an unusually large contraction of -82 +/- 3 ml/mol, an enthalpy change of 8 +/- 1 kcal/mol, and an apparent bimolecular rate constant of (0.77 +/- 0.03) x 10(10) M(-1) s(-1). Our experiments evidence a rate-limiting step for this process at high ApoMb concentrations, characterized by a value of (0. 60 +/- 0.07) x 10(6) s(-1). The second protonation reaction at pH 7. 0 can be attributed to neutralization of carboxylate groups and is accompanied by an apparent expansion of 3.4 +/- 0.2 ml/mol, occurring with an apparent bimolecular rate constant of (1.25 +/- 0.02) x 10(11) M(-1) s(-1), and a reaction enthalpy of about 2 kcal/mol. The activation energy for the processes associated with the protonation of His24 and His119 is 16.2 +/- 0.9 kcal/mol, whereas that for the neutralization of carboxylates is 9.2 +/- 0.9 kcal/mol. At pH 4.5 ApoMb is in a partially unfolded state (I) and rapid acidification experiments evidence only the process assigned to carboxylate protonation. The unusually large contraction and the high energetic barrier observed at pH 7.0 for the protonation of the His residues suggests that the formation of the compact acid intermediate involves a rate-limiting step after protonation.

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Year:  2000        PMID: 10620304      PMCID: PMC1300648          DOI: 10.1016/S0006-3495(00)76603-3

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  38 in total

1.  REVERSIBLE CONFORMATIONAL CHANGES OF MYOGLOBIN AND APOMYOGLOBIN.

Authors:  S C HARRISON; E R BLOUT
Journal:  J Biol Chem       Date:  1965-01       Impact factor: 5.157

2.  Structural characterization of a partly folded apomyoglobin intermediate.

Authors:  F M Hughson; P E Wright; R L Baldwin
Journal:  Science       Date:  1990-09-28       Impact factor: 47.728

3.  An experimental methodology for measuring volume changes in proton transfer reactions in aqueous solutions.

Authors:  C Viappiani; S Abbruzzetti; J R Small; L J Libertini; E W Small
Journal:  Biophys Chem       Date:  1998-07-13       Impact factor: 2.352

4.  Structural and dynamic characterization of partially folded states of apomyoglobin and implications for protein folding.

Authors:  D Eliezer; J Yao; H J Dyson; P E Wright
Journal:  Nat Struct Biol       Date:  1998-02

Review 5.  On volume changes accompanying conformational transitions of biopolymers.

Authors:  T V Chalikian; K J Bresiauer
Journal:  Biopolymers       Date:  1996-11       Impact factor: 2.505

6.  Observation of distinct nanosecond and microsecond protein folding events.

Authors:  R M Ballew; J Sabelko; M Gruebele
Journal:  Nat Struct Biol       Date:  1996-11

7.  Fast events in protein folding: relaxation dynamics of secondary and tertiary structure in native apomyoglobin.

Authors:  R Gilmanshin; S Williams; R H Callender; W H Woodruff; R B Dyer
Journal:  Proc Natl Acad Sci U S A       Date:  1997-04-15       Impact factor: 11.205

8.  Ultrafast signals in protein folding and the polypeptide contracted state.

Authors:  T R Sosnick; M D Shtilerman; L Mayne; S W Englander
Journal:  Proc Natl Acad Sci U S A       Date:  1997-08-05       Impact factor: 11.205

9.  Stein and Moore Award address. The molten globule intermediate of apomyoglobin and the process of protein folding.

Authors:  D Barrick; R L Baldwin
Journal:  Protein Sci       Date:  1993-06       Impact factor: 6.725

10.  Neutron diffraction study of carbonmonoxymyoglobin.

Authors:  X D Cheng; B P Schoenborn
Journal:  J Mol Biol       Date:  1991-07-20       Impact factor: 5.469

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  13 in total

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Authors:  S Abbruzzetti; C Viappiani; J R Small; L J Libertini; E W Small
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5.  Hydrated and dehydrated tertiary interactions--opening and closing--of a four-helix bundle peptide.

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Review 6.  Watching Proteins Wiggle: Mapping Structures with Two-Dimensional Infrared Spectroscopy.

Authors:  Ayanjeet Ghosh; Joshua S Ostrander; Martin T Zanni
Journal:  Chem Rev       Date:  2017-01-06       Impact factor: 60.622

7.  pH-Dependence of extrinsic and intrinsic H(+)-ion mobility in the rat ventricular myocyte, investigated using flash photolysis of a caged-H(+) compound.

Authors:  Pawel Swietach; Kenneth W Spitzer; Richard D Vaughan-Jones
Journal:  Biophys J       Date:  2006-10-20       Impact factor: 4.033

8.  A red-green photochromic bacterial protein as a new contrast agent for improved photoacoustic imaging.

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9.  A photoinduced nanoparticle separation in microchannels via pH-sensitive surface traps.

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10.  Photoacoustic spectroscopy of aromatic amino acids in proteins.

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