Literature DB >> 25722715

Tightening up the structure, lighting up the pathway: Application of molecular constraints and light to manipulate protein folding, self-assembly and function.

Beatrice N Markiewicz1, Robert M Culik2, Feng Gai1.   

Abstract

Chemical cross-linking provides an effective avenue to reduce the conformational entropy of polypeptide chains and hence has become a popular method to induce or force structural formation in peptides and proteins. Recently, other types of molecular constraints, especially photoresponsive linkers and functional groups, have also found increased use in a wide variety of applications. Herein, we provide a concise review of using various forms of molecular strategies to constrain proteins, thereby stabilizing their native states, gaining insight into their folding mechanisms, and/or providing a handle to trigger a conformational process of interest with light. The applications discussed here cover a wide range of topics, ranging from delineating the details of the protein folding energy landscape to controlling protein assembly and function.

Entities:  

Keywords:  Protein folding; aggregation; cross-linker; light-activation; phototrigger; self-assembly

Year:  2014        PMID: 25722715      PMCID: PMC4337807          DOI: 10.1007/s11426-014-5225-5

Source DB:  PubMed          Journal:  Sci China Chem        ISSN: 1869-1870            Impact factor:   9.445


  124 in total

1.  Thioxylation as One-Atom-Substitution Generates a Photoswitchable Element within the Peptide Backbone We thank Dr. Peter Bayer for the NMR investigations and Dirk Wildemann for his assistance with the peptide syntheses. This work was supported by the Deutsche Forschungsgemeinschaft, the Fond der Chemischen Industrie, the Boehringer-Ingelheim-Stiftung, and the Land Sachsen-Anhalt.

Authors: 
Journal:  Angew Chem Int Ed Engl       Date:  2000-03       Impact factor: 15.336

2.  Alpha-helix formation in a photoswitchable peptide tracked from picoseconds to microseconds by time-resolved IR spectroscopy.

Authors:  Jens Bredenbeck; Jan Helbing; Janet R Kumita; G Andrew Woolley; Peter Hamm
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-07       Impact factor: 11.205

3.  A new tool in peptide engineering: a photoswitchable stilbene-type beta-hairpin mimetic.

Authors:  Máté Erdélyi; Anders Karlén; Adolf Gogoll
Journal:  Chemistry       Date:  2005-12-23       Impact factor: 5.236

Review 4.  Regulating gene expression with light-activated oligonucleotides.

Authors:  XinJing Tang; Ivan J Dmochowski
Journal:  Mol Biosyst       Date:  2006-11-20

5.  Development of a series of cross-linking agents that effectively stabilize alpha-helical structures in various short peptides.

Authors:  Kazuhisa Fujimoto; Masaoki Kajino; Masahiko Inouye
Journal:  Chemistry       Date:  2008       Impact factor: 5.236

Review 6.  The protein folding problem.

Authors:  Ken A Dill; S Banu Ozkan; M Scott Shell; Thomas R Weikl
Journal:  Annu Rev Biophys       Date:  2008       Impact factor: 12.981

7.  Metal binding kinetics of bi-histidine sites used in psi analysis: evidence of high-energy protein folding intermediates.

Authors:  Gerra L Bosco; Michael Baxa; Tobin R Sosnick
Journal:  Biochemistry       Date:  2009-04-07       Impact factor: 3.162

8.  Light-triggered disassembly of amyloid fibrils.

Authors:  Thomas J Measey; Feng Gai
Journal:  Langmuir       Date:  2012-08-16       Impact factor: 3.882

9.  An azobenzene photoswitch sheds light on turn nucleation in amyloid-β self-assembly.

Authors:  Todd M Doran; Elizabeth A Anderson; Sarah E Latchney; Lisa A Opanashuk; Bradley L Nilsson
Journal:  ACS Chem Neurosci       Date:  2012-01-09       Impact factor: 4.418

10.  Controlled production of amyloid beta peptide from a photo-triggered, water-soluble precursor "click peptide".

Authors:  Atsuhiko Taniguchi; Mariusz Skwarczynski; Youhei Sohma; Takuma Okada; Keisuke Ikeda; Halan Prakash; Hidehito Mukai; Yoshio Hayashi; Tooru Kimura; Shun Hirota; Katsumi Matsuzaki; Yoshiaki Kiso
Journal:  Chembiochem       Date:  2008-12-15       Impact factor: 3.164

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  6 in total

Review 1.  Meandering Down the Energy Landscape of Protein Folding: Are We There Yet?

Authors:  Rachel M Abaskharon; Feng Gai
Journal:  Biophys J       Date:  2016-05-10       Impact factor: 4.033

Review 2.  Kinetics of peptide folding in lipid membranes.

Authors:  Kwang-Im Oh; Kathryn B Smith-Dupont; Beatrice N Markiewicz; Feng Gai
Journal:  Biopolymers       Date:  2015-07       Impact factor: 2.505

3.  Infrared and Fluorescence Assessment of Protein Dynamics: From Folding to Function.

Authors:  Bei Ding; Mary Rose Hilaire; Feng Gai
Journal:  J Phys Chem B       Date:  2016-05-25       Impact factor: 2.991

4.  Direct measurement of the tryptophan-mediated photocleavage kinetics of a protein disulfide bond.

Authors:  Rachel M Abaskharon; Feng Gai
Journal:  Phys Chem Chem Phys       Date:  2016-03-21       Impact factor: 3.676

5.  Biomolecular Crowding Arising from Small Molecules, Molecular Constraints, Surface Packing, and Nano-Confinement.

Authors:  Mary Rose Hilaire; Rachel M Abaskharon; Feng Gai
Journal:  J Phys Chem Lett       Date:  2015-06-18       Impact factor: 6.475

6.  Tuning the Attempt Frequency of Protein Folding Dynamics via Transition-State Rigidification: Application to Trp-Cage.

Authors:  Rachel M Abaskharon; Robert M Culik; G Andrew Woolley; Feng Gai
Journal:  J Phys Chem Lett       Date:  2015-02-05       Impact factor: 6.475

  6 in total

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