Literature DB >> 10620302

Probing protein-sugar interactions.

C Ebel1, H Eisenberg, R Ghirlando.   

Abstract

We have investigated the partial specific volumes (2) (ml/g), hydration, and cosolvent interactions of rabbit muscle aldolase by equilibrium sedimentation in the analytical ultracentrifuge and by direct density increment (partial differential/partial differentialc(2))(mu) measurements over a range of sugar concentrations and temperature. In a series of sugars increasing in size, glucose, sucrose, raffinose, and alpha-cyclodextrin, (partial differential/ partial differentialc(2))(mu) decreases linearly with the solvent density rho(0). These sugar cosolvents do not interact with the protein; however, the interaction parameter B(1) (g water/g protein) mildly increases with increasing sugar size. The experimental B(1) values are smaller than values calculated by excluded volume (rolling ball) considerations. B(1) relates to hydration in this and in other instances studied. It decreases with increasing temperature, leading to an increase in (2) due to reduced water of hydration electrostriction. The density increments (partial differential/ partial differentialc(2))(mu), however, decrease in concave up form in the case of glycerol and in concave down form for trehalose, leading to more complex behavior in the case of carbohydrates playing a biological role as osmolytes and antifreeze agents. A critical discussion, based on the thermodynamics of multicomponent solutions, is presented.

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Year:  2000        PMID: 10620302      PMCID: PMC1300646          DOI: 10.1016/S0006-3495(00)76601-X

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  51 in total

1.  Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons.

Authors:  A Nicholls; K A Sharp; B Honig
Journal:  Proteins       Date:  1991

2.  Partial volumes and compressibilities of extended polypeptide chains in aqueous solution: additivity scheme and implication of protein unfolding at normal and high pressure.

Authors:  D P Kharakoz
Journal:  Biochemistry       Date:  1997-08-19       Impact factor: 3.162

3.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

4.  Molecular architecture of rabbit skeletal muscle aldolase at 2.7-A resolution.

Authors:  J Sygusch; D Beaudry; M Allaire
Journal:  Proc Natl Acad Sci U S A       Date:  1987-11       Impact factor: 11.205

5.  Interpretation of equilibrium sedimentation measurements of proteins in guanidine hydrochloride solutions. Partial volumes, density increments, and the molecular weight of the subunits of rabbit muscle aldolase.

Authors:  E Reisler; H Eisenberg
Journal:  Biochemistry       Date:  1969-11       Impact factor: 3.162

Review 6.  Amino acid, peptide, and protein volume in solution.

Authors:  A A Zamyatnin
Journal:  Annu Rev Biophys Bioeng       Date:  1984

7.  The complete nucleotide sequence for rabbit muscle aldolase A messenger RNA.

Authors:  D R Tolan; A B Amsden; S D Putney; M S Urdea; E E Penhoet
Journal:  J Biol Chem       Date:  1984-01-25       Impact factor: 5.157

8.  Biological macromolecules in solvents of variable density: characterization by sedimentation equilibrium, densimetry, and X-ray forward scattering and an application to the 50S ribosomal subunit from Escherichia coli.

Authors:  A Tardieu; P Vachette; A Gulik; M le Maire
Journal:  Biochemistry       Date:  1981-07-21       Impact factor: 3.162

9.  Hydrodynamic studies of the interaction between nucleosome core particles and core histones.

Authors:  H Eisenberg; G Felsenfeld
Journal:  J Mol Biol       Date:  1981-08-25       Impact factor: 5.469

10.  Stabilization of protein structure by sugars.

Authors:  T Arakawa; S N Timasheff
Journal:  Biochemistry       Date:  1982-12-07       Impact factor: 3.162

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  19 in total

1.  Second virial coefficients as a measure of protein--osmolyte interactions.

Authors:  G T Weatherly; G J Pielak
Journal:  Protein Sci       Date:  2001-01       Impact factor: 6.725

2.  Modeling the hydration of proteins: prediction of structural and hydrodynamic parameters from X-ray diffraction and scattering data.

Authors:  Helmut Durchschlag; Peter Zipper
Journal:  Eur Biophys J       Date:  2003-04-25       Impact factor: 1.733

3.  Adair was right in his time.

Authors:  Henryk Eisenberg
Journal:  Eur Biophys J       Date:  2003-04-24       Impact factor: 1.733

4.  Modern analytical ultracentrifugation in protein science: look forward, not back.

Authors:  Henryk Eisenberg
Journal:  Protein Sci       Date:  2003-11       Impact factor: 6.725

Review 5.  Modern analytical ultracentrifugation in protein science: a tutorial review.

Authors:  Jacob Lebowitz; Marc S Lewis; Peter Schuck
Journal:  Protein Sci       Date:  2002-09       Impact factor: 6.725

6.  Estimating hydration changes upon biomolecular reactions from osmotic stress, high pressure, and preferential hydration experiments.

Authors:  Seishi Shimizu
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-19       Impact factor: 11.205

7.  Protein stability in mixed solvents: a balance of contact interaction and excluded volume.

Authors:  John A Schellman
Journal:  Biophys J       Date:  2003-07       Impact factor: 4.033

8.  Hfqs in Bacillus anthracis: Role of protein sequence variation in the structure and function of proteins in the Hfq family.

Authors:  Catherine Vrentas; Rodolfo Ghirlando; Andrea Keefer; Zonglin Hu; Aurelie Tomczak; Apostolos G Gittis; Athulaprabha Murthi; David N Garboczi; Susan Gottesman; Stephen H Leppla
Journal:  Protein Sci       Date:  2015-08-30       Impact factor: 6.725

9.  Solution properties of γ-crystallins: hydration of fish and mammal γ-crystallins.

Authors:  Huaying Zhao; Yingwei Chen; Lenka Rezabkova; Zhengrong Wu; Graeme Wistow; Peter Schuck
Journal:  Protein Sci       Date:  2013-11-27       Impact factor: 6.725

10.  Phenomenological partial-specific volumes for G-quadruplex DNAs.

Authors:  Lance M Hellman; David W Rodgers; Michael Gregory Fried
Journal:  Eur Biophys J       Date:  2009-02-24       Impact factor: 1.733

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