Literature DB >> 10592201

Human BAC ends.

S Zhao1.   

Abstract

The Human BAC Ends database includes all non-redundant human BAC end sequences (BESs) generated by The Institute for Genomic Research (TIGR), the University of Washington (UW) and California Institute of Technology (CalTech). It incorporates the available BAC mapping data from different genome centers and the annotation results of each end sequence for the contents of repeats, ESTs and STS markers. For each BAC end the database integrates the sequence, the phred quality scores, the map and the annotation, and provides links to sites of the library information, the reports of GenBank, dbGSS and GDB, and other relevant data. The database is freely accessible via the web and supports sequence or clone searches and anonymous FTP. The relevant sites and resources are described at http://www.tigr.org/ tdb/humgen/bac_end_search/bac_end_intro.html

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Year:  2000        PMID: 10592201      PMCID: PMC102394          DOI: 10.1093/nar/28.1.129

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  6 in total

1.  High throughput direct end sequencing of BAC clones.

Authors:  J M Kelley; C E Field; M B Craven; D Bocskai; U J Kim; S D Rounsley; M D Adams
Journal:  Nucleic Acids Res       Date:  1999-03-15       Impact factor: 16.971

Review 2.  Electronic PCR: bridging the gap between genome mapping and genome sequencing.

Authors:  G D Schuler
Journal:  Trends Biotechnol       Date:  1998-11       Impact factor: 19.536

3.  A new strategy for genome sequencing.

Authors:  J C Venter; H O Smith; L Hood
Journal:  Nature       Date:  1996-05-30       Impact factor: 49.962

4.  Shotgun sequencing of the human genome.

Authors:  J C Venter; M D Adams; G G Sutton; A R Kerlavage; H O Smith; M Hunkapiller
Journal:  Science       Date:  1998-06-05       Impact factor: 47.728

Review 5.  The origin of interspersed repeats in the human genome.

Authors:  A F Smit
Journal:  Curr Opin Genet Dev       Date:  1996-12       Impact factor: 5.578

6.  Improved tools for biological sequence comparison.

Authors:  W R Pearson; D J Lipman
Journal:  Proc Natl Acad Sci U S A       Date:  1988-04       Impact factor: 11.205

  6 in total
  9 in total

1.  GenMapDB: a database of mapped human BAC clones.

Authors:  M Morley; M Arcaro; J Burdick; R Yonescu; T Reid; I R Kirsch; V G Cheung
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  A set of BAC clones spanning the human genome.

Authors:  Martin Krzywinski; Ian Bosdet; Duane Smailus; Readman Chiu; Carrie Mathewson; Natasja Wye; Sarah Barber; Mabel Brown-John; Susanna Chan; Steve Chand; Alison Cloutier; Noreen Girn; Darlene Lee; Amara Masson; Michael Mayo; Teika Olson; Pawan Pandoh; Anna-Liisa Prabhu; Eric Schoenmakers; Miranda Tsai; Donna Albertson; Wan Lam; Chik-On Choy; Kazutoyo Osoegawa; Shaying Zhao; Pieter J de Jong; Jacqueline Schein; Steven Jones; Marco A Marra
Journal:  Nucleic Acids Res       Date:  2004-07-09       Impact factor: 16.971

3.  A bacterial artificial chromosome library for sequencing the complete human genome.

Authors:  K Osoegawa; A G Mammoser; C Wu; E Frengen; C Zeng; J J Catanese; P J de Jong
Journal:  Genome Res       Date:  2001-03       Impact factor: 9.043

4.  Mouse BAC ends quality assessment and sequence analyses.

Authors:  S Zhao; S Shatsman; B Ayodeji; K Geer; G Tsegaye; M Krol; E Gebregeorgis; A Shvartsbeyn; D Russell; L Overton; L Jiang; G Dimitrov; K Tran; J Shetty; J A Malek; T Feldblyum; W C Nierman; C M Fraser
Journal:  Genome Res       Date:  2001-10       Impact factor: 9.043

5.  Pooled genomic indexing of rhesus macaque.

Authors:  Aleksandar Milosavljevic; Ronald A Harris; Erica J Sodergren; Andrew R Jackson; Ken J Kalafus; Anne Hodgson; Andrew Cree; Weilie Dai; Miklos Csuros; Baoli Zhu; Pieter J de Jong; George M Weinstock; Richard A Gibbs
Journal:  Genome Res       Date:  2005-02       Impact factor: 9.043

6.  A comprehensive BAC resource.

Authors:  S Zhao
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

7.  Novel human ZAKI-4 isoforms: hormonal and tissue-specific regulation and function as calcineurin inhibitors.

Authors:  Xia Cao; Fukushi Kambe; Takashi Miyazaki; Devanand Sarkar; Sachiko Ohmori; Hisao Seo
Journal:  Biochem J       Date:  2002-10-15       Impact factor: 3.857

8.  Construction of a BAC library of Korean ginseng and initial analysis of BAC-end sequences.

Authors:  C P Hong; S J Lee; J Y Park; P Plaha; Y S Park; Y K Lee; J E Choi; K Y Kim; J H Lee; J Lee; H Jin; S R Choi; Y P Lim
Journal:  Mol Genet Genomics       Date:  2004-06-10       Impact factor: 3.291

9.  End-sequencing and characterization of silkworm (Bombyx mori) bacterial artificial chromosome libraries.

Authors:  Yoshitaka Suetsugu; Hiroshi Minami; Michihiko Shimomura; Shun-ichi Sasanuma; Junko Narukawa; Kazuei Mita; Kimiko Yamamoto
Journal:  BMC Genomics       Date:  2007-09-07       Impact factor: 3.969

  9 in total

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