Literature DB >> 9830153

Electronic PCR: bridging the gap between genome mapping and genome sequencing.

G D Schuler1.   

Abstract

A crucial event in the history of the Human Genome Project was the decision to use sequence-tagged sites (STSs) as common landmarks for genomic mapping. Following several years of constructing STS-based maps of ever-increasing detail, the emphasis has recently shifted towards large-scale genomic sequencing. A computational procedure called 'electronic PCR' allows STS landmarks to be revealed as data emerge from the sequencing pipeline, thereby bridging the gap between mapping and sequencing activities.

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Year:  1998        PMID: 9830153     DOI: 10.1016/s0167-7799(98)01232-3

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  34 in total

1.  JSNP: a database of common gene variations in the Japanese population.

Authors:  Mika Hirakawa; Toshihiro Tanaka; Yoichi Hashimoto; Masako Kuroda; Toshihisa Takagi; Yusuke Nakamura
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

2.  The human genome browser at UCSC.

Authors:  W James Kent; Charles W Sugnet; Terrence S Furey; Krishna M Roskin; Tom H Pringle; Alan M Zahler; David Haussler
Journal:  Genome Res       Date:  2002-06       Impact factor: 9.043

3.  1-Mb resolution array-based comparative genomic hybridization using a BAC clone set optimized for cancer gene analysis.

Authors:  Joel Greshock; Tara L Naylor; Adam Margolin; Sharon Diskin; Stephen H Cleaver; P Andrew Futreal; Pieter J deJong; Shaying Zhao; Michael Liebman; Barbara L Weber
Journal:  Genome Res       Date:  2003-12-12       Impact factor: 9.043

4.  Map error reduction: using genetic and sequence-based physical maps to order closely linked markers.

Authors:  Andrew T DeWan; Antonio R Parrado; Tara C Matise; Suzanne M Leal
Journal:  Hum Hered       Date:  2002       Impact factor: 0.444

5.  DNannotator: Annotation software tool kit for regional genomic sequences.

Authors:  Chunyu Liu; Tom I Bonner; Tu Nguyen; Jennifer L Lyons; Susan L Christian; Elliot S Gershon
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

6.  Locating sequence on FPC maps and selecting a minimal tiling path.

Authors:  Friedrich W Engler; James Hatfield; William Nelson; Carol A Soderlund
Journal:  Genome Res       Date:  2003-08-12       Impact factor: 9.043

7.  A web server for performing electronic PCR.

Authors:  Kirill Rotmistrovsky; Wonhee Jang; Gregory D Schuler
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

8.  Human BAC ends.

Authors:  S Zhao
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

9.  Systematic recovery and analysis of full-ORF human cDNA clones.

Authors:  Agnes Baross; Yaron S N Butterfield; Shaun M Coughlin; Thomas Zeng; Malachi Griffith; Obi L Griffith; Anca S Petrescu; Duane E Smailus; Jaswinder Khattra; Helen L McDonald; Sheldon J McKay; Michelle Moksa; Robert A Holt; Marco A Marra
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

10.  Understanding the development of human bladder cancer by using a whole-organ genomic mapping strategy.

Authors:  Tadeusz Majewski; Sangkyou Lee; Joon Jeong; Dong-Sup Yoon; Andrzej Kram; Mi-Sook Kim; Tomasz Tuziak; Jolanta Bondaruk; Sooyong Lee; Weon-Seo Park; Kuang S Tang; Woonbok Chung; Lanlan Shen; Saira S Ahmed; Dennis A Johnston; H Barton Grossman; Colin P Dinney; Jain-Hua Zhou; R Alan Harris; Carrie Snyder; Slawomir Filipek; Steven A Narod; Patrice Watson; Henry T Lynch; Adi Gazdar; Menashe Bar-Eli; Xifeng F Wu; David J McConkey; Keith Baggerly; Jean-Pierre Issa; William F Benedict; Steven E Scherer; Bogdan Czerniak
Journal:  Lab Invest       Date:  2008-05-05       Impact factor: 5.662

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